| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1943 |
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| Symbol | |
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| ID | 4908360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1807670 |
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| End bp | 1810066 |
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| Gene Length | 2397 bp |
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| Protein Length | 798 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640125694 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_001056825 |
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| Protein GI | 126460547 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1
[COG1845] Heme/copper-type cytochrome/quinol oxidase, subunit 3 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATGTGT TGGAGAAGCT TCTCGACTAT TTAACTACGA CGGATGCCCA CAAGATAGGC
ATCATGTACA TAACGCTGTC CGTCATAAAC TTCGTGTTGG CTGGCGTCAT GGCCTTCTAC
ATGAGGCTCA CCATTGCCGC AACTCCGCCC GGCTCTCCCA CGCCTGCTGA GTTCCCAGAC
CGGCTCTACT ACTGGGCTAT GTCTCTCCAC GGCCTTGCCA TGTTGCTCCT ATTCGCCACG
CAGGCCGTCG TGGGACTGGG CAATTTGCTT GTTCCCAAGC TCATAGGCGC GCCTGACCTC
TACTGGCCTC GGATAAACGC CCTCTCTTTC TGGATGCAGG TGCCCGCCAC CATCCTCTTC
TGGAGCGGCG CCCTCTTCTG GCAACAGGGA GACGCCCCCG GGTGGACCCT CTACGCCCCG
CTCTCCACTA GGTCTCAATC AATTGGCGTA GATCTGATAC TCTTCGGCAT AATCATAGGC
GGCTTCTCCT CCACGCTGAC TGGTATAAAC TTCATACTTA CAATTACGCG TCTGCGTAGG
CCGGACATAC CCATGTTGGA CATGTCCCTC TTTGCCTGGT CTATACTTGC CGCCTCACTC
TTGATGGTGG CCGCCCTGCC GCCTCTGGCG GTTGGCTCCA TAATGCTCAT CCTCGAGCGC
CACTTGGGCA TGGCCTTCTT TGACCAGCCA ATCGGCGACC CGAGGCTTTG GCAACACATC
TTCTGGTTCT TTGGCCACCC CGAGGTCTAC ATCTTGGTGC TCCCAGCCAT GGGGCTTGTC
TCTGAGATTA TACAGCGTAT GGCGGGTCGG AGGGCCTACG GCTACACCGC CATTGCCATC
TCATCTGTGG CCATAGCGTC TATAAGCTTC GCCGTCTGGA TGCACCACAT GTTTACCGCG
GTGCAGGACT ACGCGCCTAG GATAGCCTTT GCCATAACCA CCATGGCGGT GGCCATACCG
TCGGGGGTCA AGGTGTTCAA CTGGGTGGCG ACCCTCTACG GCGGGCGCAT AAGGCTGAAG
GCCCCCATGC TCTTCATGTT GACCTTCCTC CTCTTCTTCA TAGTAGGCGG CGTCACTGGG
GTCTTCTTCC CCGTGGTGAC CCTCGACCTG CACCTGCAGG ACACCTACTT CGTCATCGGC
CACTTCCACT ACATAGTCAA CGCCATCGCC TTCGCCGCCT TCGGCGCCCT GCTGTACTAC
TTCCCCCACC TCACTGGGAG GTGGTACCAC GAGGGGGCGG CTAAGATAAG CTGGGCATTG
ATAACTGTGG GCGGCTTCGC CACGTACACC CTGATGGCCG CCGCGGGGGT CCTCGGCTCG
CCGAGGCGCT ACGCTGGGGC GCCCACGCCC GACCTCTACC CCTACCACGC CGCAATGACC
GTGTTCACAT TTGTCCTAAC GGCAGGGATT GCCCTCCTCT TCTTTAACAT CGTGTGGAGC
TTGTTCAACG GCAGGCCTGT GAAAAACAGA GAAGACCCAT GGGGAACGGC CAAAATAGGC
CTGCCCGACG TGGTTCCGCC GCTGGTCAAG ACGCACCACG AACCTAACCC ATGGCCGTTC
ATCTTCGGTA ACGCCATGAT ACTGGTGCCC TTCGGCGTGC TGTCCCTACT CAAAGGCTAC
TCGCCCATTG TGGCCAACTC CGGCCTTTTC ACAGGCGGCA TGCCCATGGG CATTTTGGCT
CTGGGCGTAT TTCTAGCCTT TGGAGTTGCC TGGCTGAGAT TCGACCTCGT GGGCAACTGG
CTTAAGATGA GGCACATGGA CGGGGCGGCC CACTTCGAGA TACCCAAGCC TCCCAGCGTC
TGGGGCGACC TAAAGGCGTC TGTGGGCTGG GTAATATTCT CAGAGTTCGT CATATTTGCC
ACGTTGATCA GCTCGGCCTA CTACGCAAGG GTCGTGCTCT ACGACAAGTG GACTGCCGCG
GCTGAGCACC TCCCGCCCCT GCTGGGCCCC TTGTCCATCG CCATGTCCAT AGCCTTGTGG
TCGAGTAGCT TCACGGCCAT GGCGGCGAGG AGGGCCCTTC TCTCAGGCTC TCTCGGCCGC
TTCTACGGGT GGCTGGCCGC GACCATGGGC CTAGGCCTGT TCTTCGCCGC GGGCCAGTTC
TTTGCCGAAT ATCCAGAGCT CATGCACCAC GGCTTTGCGC CTGGTTCGTC CATAGTCGCC
AACTACTTCT ACACATTGGT CACGCTCCAC GGCTTCCACG TAATAATAGG CCTAGTTTTC
TGGGCCGTGG TGGCCGTGAT GGTGCGCCTC GGCTACTGGG GCCCGAGGAG GCCGCAGGGC
GTTGAGGCTG CCGAGTACTA CTGGCACTTC GTCGACGGGA TATGGGTTCT CCTCTTCTCC
ACATTCTACC TAGGCCTCAT AAACGCCATT CCGCCGCCCT ATGCCGCTGG AGCCTAA
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| Protein sequence | MHVLEKLLDY LTTTDAHKIG IMYITLSVIN FVLAGVMAFY MRLTIAATPP GSPTPAEFPD
RLYYWAMSLH GLAMLLLFAT QAVVGLGNLL VPKLIGAPDL YWPRINALSF WMQVPATILF
WSGALFWQQG DAPGWTLYAP LSTRSQSIGV DLILFGIIIG GFSSTLTGIN FILTITRLRR
PDIPMLDMSL FAWSILAASL LMVAALPPLA VGSIMLILER HLGMAFFDQP IGDPRLWQHI
FWFFGHPEVY ILVLPAMGLV SEIIQRMAGR RAYGYTAIAI SSVAIASISF AVWMHHMFTA
VQDYAPRIAF AITTMAVAIP SGVKVFNWVA TLYGGRIRLK APMLFMLTFL LFFIVGGVTG
VFFPVVTLDL HLQDTYFVIG HFHYIVNAIA FAAFGALLYY FPHLTGRWYH EGAAKISWAL
ITVGGFATYT LMAAAGVLGS PRRYAGAPTP DLYPYHAAMT VFTFVLTAGI ALLFFNIVWS
LFNGRPVKNR EDPWGTAKIG LPDVVPPLVK THHEPNPWPF IFGNAMILVP FGVLSLLKGY
SPIVANSGLF TGGMPMGILA LGVFLAFGVA WLRFDLVGNW LKMRHMDGAA HFEIPKPPSV
WGDLKASVGW VIFSEFVIFA TLISSAYYAR VVLYDKWTAA AEHLPPLLGP LSIAMSIALW
SSSFTAMAAR RALLSGSLGR FYGWLAATMG LGLFFAAGQF FAEYPELMHH GFAPGSSIVA
NYFYTLVTLH GFHVIIGLVF WAVVAVMVRL GYWGPRRPQG VEAAEYYWHF VDGIWVLLFS
TFYLGLINAI PPPYAAGA
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