Gene Pcal_1938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1938 
Symbol 
ID4908266 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1803691 
End bp1804800 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content63% 
IMG OID640125689 
Productparallel beta-helix repeat-containing protein 
Protein accessionYP_001056820 
Protein GI126460542 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3420] Nitrous oxidase accessory protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGGTAG TGGACAAGCC CGGCTTCTAT GACTATGTGT CTGGGGAGAG GGTGGTGATA 
AACGCCAGCG ACGTGAAAAT AGGCGTCTTA GAGGTACGCG GAGGCGGGGG CGAAGTGGCC
CTCCCGAGGG AGATGACGGC TTACAAGGTT AAGCCCACGG TGGGCTGCGT CGTGGTGATC
GGCGAGCGGG TTGCCGTGGA GGCGGCGCGG GTACACTGCG TCAACGGCTT GCTCATCTTC
AACTCCACAG ACGTCTACAT AGGCAGGCTG GAGATGTGGG GAGACCCCTC TCTCCCGGTC
TACCGCCGCG GCCTCGGCTT CTACGTTTTT GGGAGTAGAA ACGTCACTGT CAACGCGGCT
GTGGGGGGCT ACTTCCACGA CTGCATCTAC GCCGAGTACA GCTCTGCCCT CCGCATAGGC
AACTTCTCCC TCGCCTCTTG TAGATACGGC GTGCATATAA TGTTCAGCGA CGGCGTCTCG
GTGGCCAACG GCGTCGTTAG AGACAGCTAC GTGGGCGTGG CCGTCATGTA TACCTCAAAC
GCCACGGTAA AGGGGGTCGA GGCGGTGGAC AACCGGGAGT GGTCCGAGGG GTACGGCTTC
CTAATAGCCG AGGTGAGGGG CGGAGCAGTG GAGGACTGCA GAGCCGTGGG CAACATCCAT
GGCTTCTACG TCTTGACCTG GGGCGGCACC GCCGTGGCCG TGTCCAACTG CGCCATTGAG
GGGAACTACG TGGGAGTGAC GATTAGGGGC AAGGGCTCGT CGGGAGTCGC GTTTTACAAC
AACTCGCTCC TCGGCAACGT GGTGCAGGTA GTGTACATGG CCATAGGCGA AGACTTCCCA
CAGGCACGGT TCGTGGGCAA CATGTGGCAG GGCCACGGCA CCTCTGCCCC TTACGTCTAC
GTAAGCGCCT TCTCAGACCT CTTCACGGCC ACGGAGGGGG CACTGGGGTG GCTTGCCGCC
TTTCCGGCCA GGGCTGTGAT CGACGGCGTG GCTGGGAGGC CCCTGGCCTT TGACCCAAGC
CCGGCCCCCG CCCGCGGCGG CTCCCCCTGG CAGTTGGCCC TCCTCTTTGC ACTGCCCATT
GTAGCATACG CAGCGCGGAG GCGGGCATGA
 
Protein sequence
MVVVDKPGFY DYVSGERVVI NASDVKIGVL EVRGGGGEVA LPREMTAYKV KPTVGCVVVI 
GERVAVEAAR VHCVNGLLIF NSTDVYIGRL EMWGDPSLPV YRRGLGFYVF GSRNVTVNAA
VGGYFHDCIY AEYSSALRIG NFSLASCRYG VHIMFSDGVS VANGVVRDSY VGVAVMYTSN
ATVKGVEAVD NREWSEGYGF LIAEVRGGAV EDCRAVGNIH GFYVLTWGGT AVAVSNCAIE
GNYVGVTIRG KGSSGVAFYN NSLLGNVVQV VYMAIGEDFP QARFVGNMWQ GHGTSAPYVY
VSAFSDLFTA TEGALGWLAA FPARAVIDGV AGRPLAFDPS PAPARGGSPW QLALLFALPI
VAYAARRRA