Gene Pcal_1712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1712 
Symbol 
ID4908845 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1593539 
End bp1594153 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content57% 
IMG OID640125459 
Producturoporphyrinogen III synthase HEM4 
Protein accessionYP_001056595 
Protein GI126460317 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1587] Uroporphyrinogen-III synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.113795 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATAG TCGTGGTGAG AATTAAAGAG GGGAAGTGTC CCGAGGGGGC AACGTGCATA 
TCCATAGGCC GCGTGGCGCC CCGTCCCGAC GTGTACATCC CCGAGGGGGA CTACCTAGTG 
GTGATGAGCC CCGCCGTGGC GCAGTTTGTA GACCTCGAAA AAATAAGAGC GAGGTTCAAA 
TGTGTAATAT GCGTCGGACC CGCCACTGCA GAGGCCGTAG GGAATTGCAT CACGCCGAGG 
GAGTACAGTA GCTACGGCGT GGCCAAGTTG CTTAAGGAAC TCGCGCCGGG GGTGGTTGTG 
GTGTTAAGGT CGGGGATGGG CAACGACGTA TTGAAAAGCT TAGTTCCAAA CGTCGTGGAA 
GTGCCAGTAT ACGACATAGT TATTGAGCCG GACAAGCTTG AGAGCGCCAC GGCGGCCATA 
GCTGCGGCGA GGGCGGTAGT TTTAACGAGC GCCACAGTGG CTGAGGTTGT CGCCTCGCGA 
GTAGACTTGA GGGGTAAGAG AGTTGTAGCA ATAGGGCCTG TCACGTCAGC TAAACTAGCC 
GAGCTGGGCA TCCCCCACAT AGTAGCGCCG GAGGCCACGA TAGAGGCAGC GGTCAAAGCC 
ACAGCAGTGG CTTAA
 
Protein sequence
MSIVVVRIKE GKCPEGATCI SIGRVAPRPD VYIPEGDYLV VMSPAVAQFV DLEKIRARFK 
CVICVGPATA EAVGNCITPR EYSSYGVAKL LKELAPGVVV VLRSGMGNDV LKSLVPNVVE 
VPVYDIVIEP DKLESATAAI AAARAVVLTS ATVAEVVASR VDLRGKRVVA IGPVTSAKLA 
ELGIPHIVAP EATIEAAVKA TAVA