Gene Pcal_1371 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1371 
Symbol 
ID4908577 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1287823 
End bp1288443 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content62% 
IMG OID640125122 
Productlysine exporter protein LysE/YggA 
Protein accessionYP_001056258 
Protein GI126459980 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.739045 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTTG CCAAGTTTCT CCTCGGCGCG TTGCTCGGCT ACAGCCTCGC CGTACCTCCC 
GGCCCAATGA ACGCGCTGAT AGCCGCGTGG TCTCTCAAGA GTTTCCGCCA CGGCTTCGCC 
GTGGGGGCCG GCGCAATGAG CGCAGACTTC CTGTTAATGT TGCTAACCCT GGCCCTATCC 
ACCGCGCTTA AGTCCCTCGG CGAGATCTAC TACACGCCTT TCTACGCCGC GGGCGGGGCC 
TTCTTCCTAT ACCTAGCCTA CAAGATAGCC ACGTCTAAGC CGCCCAAGGA GGGCGGGAGC 
GGAGGGGGAA GCCCCGCGAG GGGCTACCTC CTCGGCCTCA GCCTAGGCCT CGTAAACCCC 
TACCAGGTGG GGTGGTGGAT CACCGCGGGG CTAGGCTCCA TTGCCCAATT CGGCGTCGAG 
TGGGCCGCCG GCCTTTTCGC CGCAATCTTC ACGTGGATAA CCGCCTTCCC AGCCGCCGTG 
AGGGCTGGGT GGAGGGCCAA CAGCCGCGCC ACGTGGCTCG CCATAAAGAT CTTCTCCACG 
GCCACCCTCC TCATATTCGG CGCATACTTC CTCTACATCT CTGTGCTACT CATTTACAAG 
ACGCTGACAT CTGCACATTG A
 
Protein sequence
MDFAKFLLGA LLGYSLAVPP GPMNALIAAW SLKSFRHGFA VGAGAMSADF LLMLLTLALS 
TALKSLGEIY YTPFYAAGGA FFLYLAYKIA TSKPPKEGGS GGGSPARGYL LGLSLGLVNP 
YQVGWWITAG LGSIAQFGVE WAAGLFAAIF TWITAFPAAV RAGWRANSRA TWLAIKIFST 
ATLLIFGAYF LYISVLLIYK TLTSAH