| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1230 |
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| Symbol | |
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| ID | 4910286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1144505 |
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| End bp | 1145503 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640124984 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001056121 |
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| Protein GI | 126459843 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.314412 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTCTT TTCGTAGGTT TTTACTCCGA CGCATTCTCA CTTTTCTACC CACGATCTTC
GGCGTCGTCT TTATTACCTA CCTAATTGCG TACGCCATCC CGGCCGACCC TGTGAGGGCT
TGGGCTGGGG GCGAGAAGGC GAAGCCCGAG GTTATTGAAA AGCTCAAGGA GTATTACCAC
TTTGATAGAC CTTGGTATGA GCAGTTCTAC TACTTCCTGG TTAGGCTTTT CGAGGGCTCT
TTAATTAGCC CACGTACTGG CAACACGGTG TTTTCAGACA TAGCGGCCCG CTTCTCTGTG
ACTCTACAGC TGGCCCTCTT CTCCATATTC TTCTCTGTGG TAATAGGCCT GCCCCTCGGG
CTTTTAGCCG CGTATAAGCG TGATACTAAG ATAGACGCCG CTGTGAGAGT GCTTGCGCTG
ATAGGGGTCT CAATGCCCGC CTTCCTCTTG GCCTACCTAT TGATACTAGT GTTCTTCGTC
CAGTTCAAGG CCATAACTCT CGCCGGTGTT CCAACGTCTA AGGTGGTGAT AACCGGCGTG
CCTTTGATTG ACGCGTTGAT CACTGGGGAT TGGCAGTCTC TTTCTCAGAT AGTGGGCAGA
TACTGGCTTC CTGGGTTTGT CCTAGGCTTC TCCGGTGCGG GCATTATCGC CAGGTTTGTG
AGAAATTCCA CAGTGGAGGC TCTGGGGGCC GACTTCGTGG AGTATCTACA CGCCAAGGGC
GTCCCCGTGA GCTGGGTTAG GAGACACGTC TTTAAGAACT CGCTGGTGCC CATAGTTACA
ATAATTGGCC TAGAGTTTGG CGCATCGCTG AGCGGCGCCC CCATCACAGA GACCATCTTC
GGCCTGCCGG GGCTGGGGGC CTACGCCGTG CAGTCGATAT ACTACCTAGA CTTCCCCGCC
ATCATTGGCA CAACCTTCGT CTTCGCCTTG ATATACGTAG TTACCAACTT CGTAATCGAC
GTATTATACG CTTTTATAGA CCCCAGAGTG AGGTATTGA
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| Protein sequence | MSSFRRFLLR RILTFLPTIF GVVFITYLIA YAIPADPVRA WAGGEKAKPE VIEKLKEYYH
FDRPWYEQFY YFLVRLFEGS LISPRTGNTV FSDIAARFSV TLQLALFSIF FSVVIGLPLG
LLAAYKRDTK IDAAVRVLAL IGVSMPAFLL AYLLILVFFV QFKAITLAGV PTSKVVITGV
PLIDALITGD WQSLSQIVGR YWLPGFVLGF SGAGIIARFV RNSTVEALGA DFVEYLHAKG
VPVSWVRRHV FKNSLVPIVT IIGLEFGASL SGAPITETIF GLPGLGAYAV QSIYYLDFPA
IIGTTFVFAL IYVVTNFVID VLYAFIDPRV RY
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