Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_3631 |
Symbol | |
ID | 4175411 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 4372109 |
End bp | 4373995 |
Gene Length | 1887 bp |
Protein Length | 628 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638056661 |
Product | diguanylate cyclase |
Protein accession | YP_663187 |
Protein GI | 109899932 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATCAAGG TTATATGGAT TTGTACTGTA TTGATTTTTT GGGTGCCGGT GAAAGCGTTT GCGGCCCAAG CTGTGGTGTA TAGCTTTTCA GATGAATACC AATCCCTCAC GTCAAGATTA ACCACTGCGC CTCAACAAGT CTTAACACAG TTAATAAACT CAGCGCCGCA ACATGAGGCA AGTAACGTGG TTAAAGCTGA GTACTATGCC ATTTTAAGTG ACACTTACTA CGCGCTAACG TATCCGCAAA AAGCAATTGA GAGCGCGCAA CAAGGTCTGA GTTTTATCAC CGAAGAGTCA GAACCTTGGT TGTACCATAA TTTGAAATTA ATCGAAGCGA CAGCGATAGA GATGGCGGGT GAGCCCATTG ATGCGTTGTT GGCTGTCAAT AAAGCGGTGG CGTGGGCAAA AGATAACCAC AGCGAAGCAA CATATATACT CGGTTTATAT GTTAGAGGCT TGTTATTTAC CTCGTTAAAT GAGTATAGCG GCGCTGCAGA GAACTTCTTA GAAGCCTACA GTTTGTCTAC CCAATATACC GGCAAAATTT CCAAGGCTAA TATTGCCGGC ATGATTGGGG TTATGTACGA AAATCGCGGT GATTATAAAC TGGCGATCCC CTATTACGCC GAAGCTGTTG CCCACGCACG TAAAAATAAC GAACCCCTGA ATTTAAGCAT CGTATTGTTT GGTTTAGGCT CAGCTAATTT TGGTGCCGGT AATATTGATT TAGGCGAAAC GCAACTTATT GAATCCGCGG ATATTGCACG CTCATTGGAT GACTCCCAAG GGGTTGGGTA TGCGCTCAAG CAGTTAGCAA AAATCAGTAT AAAGAAACAA GACTACGCAT TGGCCGAAAA GCGTTTGAAA AGAGCAGCTG ACATTTTTGC TGAGAGCGAA AATAGACCGA TAGATTTTCA GATTTCAAAA AGTTTGTTTG AAGTGGCTTT AGCGACAGGG GAACTCGAAA AAGCCGAGCA ACATCGTGAT AGCGCAAAAG AATATTTAAA TCCTGCCACC ATGCCTAGCG ACACCATAGA GATAGAGCAA CTCGAAGCTG AGTTAGCAGC TGCCCAGGGG GATCTAGCCG CGGCTTATGC ACACATGCAG CACGCCCTAA CCTTGAGTAG TGAATATCAT GCGACCAGAA ACTCTGAACA ACTTCATCGT TTGCGAGCCA TTTATCGCGT GCGCGCCTCA GAACAGGAGA ACAAGATACT AGAGCATCAA AATCGTTTGC AGCGTTTTGC GCTTAGTGCT CAAGAGCAGC GCAATATTTA TTTGTGGGCG TTTCTGGGTA TTGTGTTGGT AGTGTGTTGT TTATTAGCTG TGATGGTTTA TCGGGTCAAG GCGCAAAGTA GGGCACTTAC AAAACTTGCG ATCACAGATG ATCTAACCGG CTTGTACAAC AGGCGTCACA TTATCGAGCA GCTTGAGCGA CAAGTACATG CAGCGAACCG CTACAAGTAT GATTTGTGTG TCGCGATTAT CGATTTAGAT TTCTTCAAGA AGATCAACGA CAGCTATGGC CACGCAGTGG GCGATCGTGT GTTAATTGAA TTCAGTGATA TATGCAGTAA AAATCTACGG CAGTCCGATA TTATCGGGCG TATTGGCGGC GAAGAATTTT TGGTCATTTT ACCGCACACC AATTTGCAAG ATGGGTATAA TGCACTAGAC GGTTTACGCC ATAAAATATC TATGGTGAAT AATGTGGTTG ATATCAAAGA TTTATCCATC AGTGCTTCAA TTGGTTTGAC CTTCAATACC GATAGCCGAG AGAGCATGCA ATTAATGGCC GATGCCGATA CCGCACTTTA TCAAGCCAAA ACCCAGGGAC GCGATCAGGT CGTGATCCAT CCACAGAGCA CGCCAGTTAA TTCGTAA
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Protein sequence | MIKVIWICTV LIFWVPVKAF AAQAVVYSFS DEYQSLTSRL TTAPQQVLTQ LINSAPQHEA SNVVKAEYYA ILSDTYYALT YPQKAIESAQ QGLSFITEES EPWLYHNLKL IEATAIEMAG EPIDALLAVN KAVAWAKDNH SEATYILGLY VRGLLFTSLN EYSGAAENFL EAYSLSTQYT GKISKANIAG MIGVMYENRG DYKLAIPYYA EAVAHARKNN EPLNLSIVLF GLGSANFGAG NIDLGETQLI ESADIARSLD DSQGVGYALK QLAKISIKKQ DYALAEKRLK RAADIFAESE NRPIDFQISK SLFEVALATG ELEKAEQHRD SAKEYLNPAT MPSDTIEIEQ LEAELAAAQG DLAAAYAHMQ HALTLSSEYH ATRNSEQLHR LRAIYRVRAS EQENKILEHQ NRLQRFALSA QEQRNIYLWA FLGIVLVVCC LLAVMVYRVK AQSRALTKLA ITDDLTGLYN RRHIIEQLER QVHAANRYKY DLCVAIIDLD FFKKINDSYG HAVGDRVLIE FSDICSKNLR QSDIIGRIGG EEFLVILPHT NLQDGYNALD GLRHKISMVN NVVDIKDLSI SASIGLTFNT DSRESMQLMA DADTALYQAK TQGRDQVVIH PQSTPVNS
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