| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2870 |
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| Symbol | |
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| ID | 4174629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 3482720 |
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| End bp | 3483775 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055884 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_662432 |
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| Protein GI | 109899177 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.551784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTGTA CAAAATGTAG TTTGGTTTTT ATGGGCGCGA TCATGCTGCA AGCGTGTTCG
CCGAATATAG AGCACCGCAG CAAACCGCCT CTTATTTTAG ATACCATTAC TGTACCCGCA
CCTATTGAAA CCCAATTTCG TGCATTCAAT GGTCAGGTTA TTGCACCTGA GCTCACACCG
CTATCGTTTC GTCTAGAAGG CGAAATTCTA GATGTATTGG TACAAGAAGG GGATGAGGTC
AAAAAAGGTC AAGTATTGGC GATTTTGGAT GACAGTAAAC GCAAAGAAAC GTTGAATGAC
GCCCAAGCAA AACTTGATTT AGTTGCACGT CAATTAGCAC GGGGTAAGGA GCTAAGAGAG
AGGGAAATGC TATCTTCTTC GGAACTCGAC GAGCTCAAGG CAAACTACAA ACTTGCACTA
GCGAATGCCA AACTGGCCGA AGTACAACTT GGCTACACCC GCATCAAAGC CCCGGTAGAT
GGCATTATCT CGCAAGTATC AAAACAAGAT TTTGAGCGTA CAGCCGCGGG CGAAACGGTC
GTCAGTATCT ATCAGAGCAA AGATGTATAC GTTGAAATTT CAGTGTCTGA CACCGTATTG
ACGCGCTTGA AACCATTATT GAGCGTACCA AATTATCGGC CTGTCGCGCA TTTCAATGGC
TACGAAGGGA ATTACCCACT CGATTACCTT GAGCACACCA GTGAGCTAAA CCCTGAATCT
CAGACCTATC AATTTTGGCT ACGTATGCCT CAAGTTACCC CTAAAATTTT ACCCGGTACT
AACGTGCGCG TCAGTGTTGA CATGATCAAA GCGCAGATGT CTATGCTACA TGGCTATGCC
TTACCAGTGA CCGCGCTTGA CGCAGCTAGC GAGCGTGGGC AATTCAAAGT ATGGAAAATT
CAAGACGGGG CAGTAACTGC ATTCCCGGTT GAGGTTAGTC AGGTTAAATC CAACGGTGTA
ATTGTTACCA GCGGTGTGCG TGAGGGCGAT GTGATTGCCA ACTCGAATTT AAGAAAATTA
AGACAGGGTA TGACGATCCC AGGAGCCGTA AAGTGA
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| Protein sequence | MNCTKCSLVF MGAIMLQACS PNIEHRSKPP LILDTITVPA PIETQFRAFN GQVIAPELTP
LSFRLEGEIL DVLVQEGDEV KKGQVLAILD DSKRKETLND AQAKLDLVAR QLARGKELRE
REMLSSSELD ELKANYKLAL ANAKLAEVQL GYTRIKAPVD GIISQVSKQD FERTAAGETV
VSIYQSKDVY VEISVSDTVL TRLKPLLSVP NYRPVAHFNG YEGNYPLDYL EHTSELNPES
QTYQFWLRMP QVTPKILPGT NVRVSVDMIK AQMSMLHGYA LPVTALDAAS ERGQFKVWKI
QDGAVTAFPV EVSQVKSNGV IVTSGVREGD VIANSNLRKL RQGMTIPGAV K
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