Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2733 |
Symbol | |
ID | 4174493 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 3327340 |
End bp | 3328353 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638055750 |
Product | polysaccharide deacetylase |
Protein accession | YP_662298 |
Protein GI | 109899043 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.437035 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGCG ATCCTGGATT TTACGACTAT TGGCCTTACG AAAATCGCCC GAAAATTCGT TGGCCCGGCG GTAAAAAAAT GGCCTTTTGG GTGGCGCCGA ATATTGAGTT TTATGAACTG AATCCGCCAG CTAACCCATC TCGCAAAGCG TGGCCGCAGC CCTACCCAGC CACACAAGGC TACAGTATCC GTGATTACGG CAATCGTGTG GGCCATCAGC GGCAAATGGA CTTACTGGAT AAATACGGCA TTCGCGGCTC TATTTCGTTA TCAACTGCCC TTTGCGATCA CCACCCTGAA ATTATTCAAA TGTGCAAAGA GCGAGATTGG GAGTTTTTCA GCCACGGCAT TTACAATACA CGTTACACCT ACGGCATGTC TGAGCAGCAA GAGCGCGACA TGATCAAGGA TTCAATGCAA ACGATTTATC AGCACACAGG GCAAAAGTGT GCTGGCTATT TGGCACCAGC GCTGTCCCAT TCAGAGCTTA CCTTAGATTT ATTCGCTGAA GTAGGCACAG AGTTGTTTGG CAATGAAGGC GGTATCTATA CCTGTGATTT ATTTCATGAC GATCAGCCCA CCCCCATACA CACTCGCAGT AATAAACCGT TTGTGTCTAT TCCTTATTCA CTGGAAATGA ACGACACCAT TGCCTTTGTA GTGAACAAAA TTGAACCCAG ACGTTACGGC CAGATGCTCA AGAAAAACTT TGATCGACTT TACGCCGAAG CGGACGAATC AGGCACCATT ATGTGTATTC CTACACATAA TTATCAGGTG TCTTGCCCAC ATCGTATGAA GGCATTTGAA GAAGCGCTTG ATTACATCAC CAGTCACGAG GATGTATGGG TGACCACAGG CAAAGAGATT GCCGATTACT ACCTTGAGCA TTACTACGAG CAAGCTAAAA CAGACATTGC GCAAAAGAAC GCGGCTGCCT TAAATAACGC TGTAGCCTTG AATAACGCTG TGGCCTTGAA TACTCCTGTA GCCCCGAACA AAGGAGCGAA ATAA
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Protein sequence | MKSDPGFYDY WPYENRPKIR WPGGKKMAFW VAPNIEFYEL NPPANPSRKA WPQPYPATQG YSIRDYGNRV GHQRQMDLLD KYGIRGSISL STALCDHHPE IIQMCKERDW EFFSHGIYNT RYTYGMSEQQ ERDMIKDSMQ TIYQHTGQKC AGYLAPALSH SELTLDLFAE VGTELFGNEG GIYTCDLFHD DQPTPIHTRS NKPFVSIPYS LEMNDTIAFV VNKIEPRRYG QMLKKNFDRL YAEADESGTI MCIPTHNYQV SCPHRMKAFE EALDYITSHE DVWVTTGKEI ADYYLEHYYE QAKTDIAQKN AAALNNAVAL NNAVALNTPV APNKGAK
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