| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2624 |
|---|
| Symbol | |
|---|
| ID | 4174384 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | + |
|---|
| Start bp | 3187786 |
|---|
| End bp | 3188940 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638055645 |
|---|
| Product | Rieske (2Fe-2S) region |
|---|
| Protein accession | YP_662193 |
|---|
| Protein GI | 109898938 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCA ATACCAATGA TCAAAATACA CTACTCACCG ATATAGAAGT CGTGCAAAGA
ATTTTCGCAC ATATCGACAA CAGCACAACC GATCTAGGCA AGCAAAGCTG GCGGGAGCCC
ACAGCTAATT ACCGCTCGAA AGCGCGACTT GAGGCAGAGC TTGATATTTT GCAAAGTCGA
AGCATCGTTT TTTGCCCCTC AAGCGCACTC GCCAAAATAG GGGACTATGT TGCCCGTGAC
GCAGCCACCG TGCCTTTGAT TGCTGTGCGC GGATTGGACG GCGTTATTCG TGCCTTTAGA
AATGCCTGCC GTCACCGAGG CGTTAAACTC GCTGAAGGGC AAGGTTGTGC TCGTGCATTG
GTTTGCCCCT ATCATGGTTG GGCATACAAT CTTAACGGGA GCCTGCTAAG TATTCCCCAT
GAAGATGGGT TTCCAGATGT TGATAAAGCA ACACGTGGAC TTGTTGAGGT GGCCTGTTTC
GAGAGCAATG GCTTGGTATT TATTAACCAA AACCCGCAAG CAAATATAGA GCAAGATATA
GCGCCTATTC CTCACCTTAT TCCTGAGCAT TACCGTTTAT TAAATTCAAC CCGTCAGGTA
GTCAAAGCGA ATTGGAAGCT TTATCTAGAA AGCTCTCTTG AGGGTTACCA TATTCGCCAA
ACACACAAAC GCACGTTTTT CCCCGTGCAA TACGACAACC TCACGGTGAT CGAAGCCTTT
GGGGAGAATA GCCGCGTAAC ATTTCCCTAC CAAGCAATAG AGGGGTTAAG GCATAACAAG
GCATCTGACA TCTCAGTTGA TGGGCGACTT ACCTACGTTT ATCACCTGTT TCCCAATGTG
GTTATTTCAA CCTTTCCAGG ATGTATGCAA GTCAATGTGC TCGAGCCTAT TGATGAGGCA
ACAACAGAGC AACATACCTA CCTTATCAGC GCGATTGGCG AGCATGACAC CGCAAGGCTT
GATGCTATTT CAGAAGGTCA AGAGTTCGCT GCTAAAGGTG CGGTTGAAGA TTTGCAGATA
GTGCTATCCG CTCAAAAGGG ACTGGCAAGC GAAGCAAATG AATTTTTAGA ATTTGGCTTA
TTTGAGAGCG CGATCGTGCG CCTGCATACC CACCTTGCAA AAGAATTTGA GCGAGTGAGT
AAAGCAAAAG GCTAA
|
|---|
| Protein sequence | MPVNTNDQNT LLTDIEVVQR IFAHIDNSTT DLGKQSWREP TANYRSKARL EAELDILQSR
SIVFCPSSAL AKIGDYVARD AATVPLIAVR GLDGVIRAFR NACRHRGVKL AEGQGCARAL
VCPYHGWAYN LNGSLLSIPH EDGFPDVDKA TRGLVEVACF ESNGLVFINQ NPQANIEQDI
APIPHLIPEH YRLLNSTRQV VKANWKLYLE SSLEGYHIRQ THKRTFFPVQ YDNLTVIEAF
GENSRVTFPY QAIEGLRHNK ASDISVDGRL TYVYHLFPNV VISTFPGCMQ VNVLEPIDEA
TTEQHTYLIS AIGEHDTARL DAISEGQEFA AKGAVEDLQI VLSAQKGLAS EANEFLEFGL
FESAIVRLHT HLAKEFERVS KAKG
|
|---|
| |