| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2263 |
|---|
| Symbol | |
|---|
| ID | 4172417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudoalteromonas atlantica T6c |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008228 |
|---|
| Strand | - |
|---|
| Start bp | 2752487 |
|---|
| End bp | 2754121 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638055273 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_661835 |
|---|
| Protein GI | 109898580 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTCTG TTTTACTGAT AATTTTTATT TCGTTGGCCA TTGCCACTGT CTTGAACATA
GTGCTGAAGA AGCTTTCTGT GTCACATATT ATTGGCTACA TCATGACAGG GACCATTATC
AGCAATATTT TCCATTTCGA TGATAGCGAA AAGTTGCACT CTCTCGATCT GATAGGCGAA
TTTGGTATTG TCTTTTTAAT GTTCACCATT GGTTTAGAGC TTTCTTTTAA TAAGCTTAAA
AAAATGAAGG AACTGGTGTT TATCAATGGG TTCGTGCAAG TCGTGGGTAG TGCGCTGCTC
ATTTTTGCTA TCGCTTACTA TCTATTTTCA CAAACAATTA CGGCGTCGGT GATTATTGCA
TTGGCGTTTA GTTTGTCATC GACAGCCATT GTTTTAAGTT ACCTGAAGAA ATCAAAAGAC
GTTGTGACCC CTTATGGTGA AAAATCGGTG GCGATCCTGA TTTTTCAAGA TTTAGCCGTG
ATCCCCATAC TGCTATTAAT AAGCTTCTTA GCAAACAGCG AGCTGTCTGT AGGTGACGTG
CTTTTAAATA CCTTACTGTC AGCCACCTTG GTGATTGTGT TCATGTTTAC GCTGGGCAAG
AAGATTATTG AATGGCTGCT GCATTTTTCC ACAAACGCTA AACTGGAAGA GCTATTTTTG
GGCTCTGTGC TGACCATTGT GATCGGCGCC TCATTGCTTG CCCATGAAAT GGGATTTACT
TACTCATTAG GTGCATTCAT AGCAGGCATG ATCATCGCGG AAACCAATTT TCATGTAAAA
GTTGAGTCAG ACATCGCTTC CTATAAAGAC ATTTTGCTTG GTGCGTTTTT CTTTTCCATC
GGCACGAAAA TAGATATCGC TTATTTTTAT CAAGAGTTCT TCATGGTACT GGGTGTTTTA
GCATTAGCTA TGCTGACAAA AGCGCTATTT ATTTTTGCGC TAATACGCCG CAAGTCAAAC
AAAAGTGATG CAGTTAAAAC TGCCATCGCT TTGTGCCAAA TAGGCGAATT TTCATTTGCG
ATATTTTCGC TGGCTTTGTC AGAAAATATA ATTTCTAACG AGTTAGGTAG CTTCCTTATT
CTCGTGACCG TGCTGTCGAT GATAGTCACG CCTTTTATGG TCAACAATAT CTATAAGTTA
GCTTCATTTT TCGTGGTTGA ATTCTTCGAG TCAGATAAAA TCACCCCCAT CAATGAACAG
CAGCACACCG TCATTTGTGG CTTTGCCATT GTCGGACGTA TTGTGGCAAA GGAGCTTAAA
GCGAAGGGCA TACGTTTCAT CATTATTTCC GATAATTTAC AACATGTACT ACTTGCTCGA
GAACGGGGCT ACATGGCTTA CTTTGGACAC TTAGACAAAC GACCCGTTCT GGAATCATTG
AAAATAGAAG AATCAGCAAG TGTCATTTTA ACAGTCACAA ATTTAGTCAA AAAGAAAATT
ATTTGCCAAG CCGTCTTGAA CTTTCATCCT CAGGCTAAGG TGATTGTGAA AATTAATAGC
CAAGAAGAGA AAAGGGCGCT AATGGGAATG GGGATATGCG CATTTGTGCA TGCTGAACAC
GAAACCGCTC GATTATTAGT TAAAAAAAGT ATCTCTAATA GCGTTGAGGT GGACGATACG
CTGGCTACCG ATTAA
|
|---|
| Protein sequence | MDSVLLIIFI SLAIATVLNI VLKKLSVSHI IGYIMTGTII SNIFHFDDSE KLHSLDLIGE
FGIVFLMFTI GLELSFNKLK KMKELVFING FVQVVGSALL IFAIAYYLFS QTITASVIIA
LAFSLSSTAI VLSYLKKSKD VVTPYGEKSV AILIFQDLAV IPILLLISFL ANSELSVGDV
LLNTLLSATL VIVFMFTLGK KIIEWLLHFS TNAKLEELFL GSVLTIVIGA SLLAHEMGFT
YSLGAFIAGM IIAETNFHVK VESDIASYKD ILLGAFFFSI GTKIDIAYFY QEFFMVLGVL
ALAMLTKALF IFALIRRKSN KSDAVKTAIA LCQIGEFSFA IFSLALSENI ISNELGSFLI
LVTVLSMIVT PFMVNNIYKL ASFFVVEFFE SDKITPINEQ QHTVICGFAI VGRIVAKELK
AKGIRFIIIS DNLQHVLLAR ERGYMAYFGH LDKRPVLESL KIEESASVIL TVTNLVKKKI
ICQAVLNFHP QAKVIVKINS QEEKRALMGM GICAFVHAEH ETARLLVKKS ISNSVEVDDT
LATD
|
|---|
| |