| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2234 |
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| Symbol | |
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| ID | 4172386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 2706560 |
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| End bp | 2707783 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638055242 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_661806 |
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| Protein GI | 109898551 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.282252 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAACAAAA CTACATATTT ATTTAGCAGC CTAGTACTGA GCATACTCTT TGTGCTCACC
GCTTGTTCTG AACAATCAGA GGTTAAACAC GAAGTCATTC GGCCCATTGC TTGGGCAAAG
GTAAAAACGC ATGACTTGAC CCAAGTGCGC AGATTAGCCG GTGCCACTGC CGCGATTGAA
AAAGCGTCAC TGAGCTTTTT GGTTGGCGGT AAAGTCGATG GTGTATCGGT TAATCTAGGC
CAGAAAATCA CTAAGGGTCA AGTACTAGCC ACACTCGACC AACGCAGTTT TAATCTTAAC
TATCAATCCG CTCAAGCTAA GTACGCCCAA GCTAGCTCAG CACTGAACGA AGCTGAAAAC
GAGTATCAGC GCTATAAAGA ACTTGTTGAA CAAGGGTTGG TATCAAAGTC TGGTTTTGAC
AACGCAGAAG CAGCGTATAA ATCAGCCCTA AGTAACGTTG AAGTCGCTAA AAGTCAGCTT
GAACTAGCCA CCAAAGACAG ACAAGACAGT ACCCTTCAAG CCCCCTACGA TGGCGTTATT
ACTAAACGTA TGATTGAGCC ATCGCAGCAA ATTTCTCCGG GACAAAGCGT ATTTGAAGTT
GAAGGTCACG GCGGTCTTGA AGTTCATGTG TCAGTACCTG AGAGTTTAAT TCAACAATTA
TCCAACGGTA TGATTGTTCC TGTGCGTTTC CCTGCCGCGC CAAATGTTGA ACTAACGGGT
GTTATCACCG AAGTGGGTAC CCGAGCTGAG ACCGCAAATG CATTCCCTAT CACTATGGTA
TTAAACGGCA GTTCACCGCA ACTGCGCGCT GGAATGACGG CTGAAGTAGA CATCACCTAT
ATCAATGAGA CATATGAAAA CGCCTTGTCC CAAGTAGGAG ATGGTCAAAG CACTGAGGGC
CAATCTGCCG ATACCCAAAG TGCTAAAGGC AAGAACCTTG GCGGTCAGAT GAATGGTGCA
AATGTAGCGG CGAAAAAAAC CATGATCATT CCTGTGTCTG CGTTAGGTGC GGGCTTGAAT
CAAACTAAGT ACGTATTTGT TTATGACGAC GCTACGCAAA CCGTGTCAAA ACGAGACGTA
GTGGCCAGCA ACATTTTGGG TAATGAGGTC TTTATCGCAA AAGGCCTCAA AGCGCAGGAA
ATTATCGCTA TCGCGGGCGT GTCCTTTCTG CGAGATGGTC AGAAAGTGAC CTTGCTCGAT
GCCAATGTAA AACGCTTCAA CTAA
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| Protein sequence | MNKTTYLFSS LVLSILFVLT ACSEQSEVKH EVIRPIAWAK VKTHDLTQVR RLAGATAAIE
KASLSFLVGG KVDGVSVNLG QKITKGQVLA TLDQRSFNLN YQSAQAKYAQ ASSALNEAEN
EYQRYKELVE QGLVSKSGFD NAEAAYKSAL SNVEVAKSQL ELATKDRQDS TLQAPYDGVI
TKRMIEPSQQ ISPGQSVFEV EGHGGLEVHV SVPESLIQQL SNGMIVPVRF PAAPNVELTG
VITEVGTRAE TANAFPITMV LNGSSPQLRA GMTAEVDITY INETYENALS QVGDGQSTEG
QSADTQSAKG KNLGGQMNGA NVAAKKTMII PVSALGAGLN QTKYVFVYDD ATQTVSKRDV
VASNILGNEV FIAKGLKAQE IIAIAGVSFL RDGQKVTLLD ANVKRFN
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