| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_2186 |
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| Symbol | |
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| ID | 4172338 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 2641997 |
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| End bp | 2643727 |
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| Gene Length | 1731 bp |
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| Protein Length | 576 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638055194 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_661758 |
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| Protein GI | 109898503 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATTA CATGTCCGTC TTCATCCAAT ACTGCGCAAT ATTGCATGCG TACACTTACC
ATATCAGTTG TGCTTGCTAT GGCTGGTTGT GCTCCTACCA ATAAGAGTCA TGTCACAGAG
TCAGCTAACA GCACAACACA GCAGTCTTAT GGCACCGATA ATCCGTTTGT AAAAGAAGCG
GTGTACTTTG TTATGACAGA CAGATTTGTT GATGGCGATA AGGCAAATAA CTACTCTGAA
CAAGGTGGAA ATCTGCCTAG TTTCAATTTG CCCTTATATG GTGAAAACGG TGAAACAGCT
AATGTGGGTT ATTTGGGGGG GGACTTACGC GGTGTGCTTG ATAACGGACG ATATATCAGC
GATATGGGGT TTACCGCAGT TTGGTTAACA CCTGTAGTGG ATAACCCTGA CCAGCAATTT
TCAGGCGGCG AAGCCATAGG CTTCAAAGGC GCATTTAAGG ACGGTGGTAA ATCCGCTTAC
CACGGCTATT GGGCCTCAAA TTTTTATAAA ATCGACGAAC ATTATCCTTC TAGCGATCTT
GATTATAAAA AATATACCAG CAGTATGCGT GAACAACATG GTTTGAAAAC GGTGTTTGAT
GTGGTCGCCA ATCATGGCTC ACCTTCTTTT ACTATGGCGG TTGAGCAAGA AAAATTTGGT
AAACTGTATG ATGAAAACGA TCAGCTTGTG GCGGATCATC ACAACGTACC GCCGGAGAAG
CTCGATCCAA ATAATCCTTT GCATCAGTTT TATCACACTG AACCGGATAT TATGCAGCTA
TCTAACCTGA ATGAAGATAA TGCACAATTA CGCGACTACT TAATTAACGC CTATTTATAT
TGGATAGAGC AGGGGGCAGA TGCATTTAGG ATCGATACCA TAAAACACGT GCCACATCAT
TTTTGGCAGG AAATGGCTGC TCGGGTTAGG GCATTGCACC CTGATTTTTT TATGTTTGCT
GAAAGTTATG ATTACAATGC CAACTTTATA GCTCAACATA CCTTGCCTAA AAACGGCGGG
ATAAGTGTTT TAGACTTTCC GGGCCAAAAA GCCATTACAG ATGTTTTTGA ATCATCAAGT
AGTGATTTTT CCGACTTGTT GCCTTATCTA CATTTGACTC ATGGGCCCTA TGCGAATCCC
TACGAGTTAA CCACGTTTTA CGACAATCAC GATATGCCAA GAATGAACGC CAGCGATACG
GGTTTTATTG ACGCGAATAA TTGGTTGTTT ACCAGTCGCG GGATCCCAGT CGTTTATCAA
GGGTCTGAAA TTGGCTTTAT GCGAGGTAAG GCGGAGCATC AAGGTAACCG TAATTACCTT
GGCCAAGCCA ATATTGATTT GGCCAAAACC CATCCAATCC ACAATGCCCT CACTGGAATT
GCTAATGTGC GCAAAAGCAC GCCTGCGCTA CAAAATGGTT TGCAGGTCAA CCTTGAGTTC
AAAGGCGATT TCGCAGCGTT TTATCGGGTT ATACAAAAAG GTGATATCGC TCAAACGGCG
CTTATATTGT TGAACAAGAG CGATGAGACA CATCGTTTTA CTATTTCTAA GTATTTGGAT
GCAGGCACCT GGACTGAAAT GCGCTTTAAG CAAGATACGC AAGTTATCGA GCAAGGAGAA
TCGTTAGTCG CTGAGGTACC AGGTCACAGT GTTCATGTGT GGGTCAGAGA CGCAAAAGTC
ATGAACGAGT CCCTCAACGC GGAATTAGCG CGATTAATGG CGTTTAAATG A
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| Protein sequence | MKITCPSSSN TAQYCMRTLT ISVVLAMAGC APTNKSHVTE SANSTTQQSY GTDNPFVKEA
VYFVMTDRFV DGDKANNYSE QGGNLPSFNL PLYGENGETA NVGYLGGDLR GVLDNGRYIS
DMGFTAVWLT PVVDNPDQQF SGGEAIGFKG AFKDGGKSAY HGYWASNFYK IDEHYPSSDL
DYKKYTSSMR EQHGLKTVFD VVANHGSPSF TMAVEQEKFG KLYDENDQLV ADHHNVPPEK
LDPNNPLHQF YHTEPDIMQL SNLNEDNAQL RDYLINAYLY WIEQGADAFR IDTIKHVPHH
FWQEMAARVR ALHPDFFMFA ESYDYNANFI AQHTLPKNGG ISVLDFPGQK AITDVFESSS
SDFSDLLPYL HLTHGPYANP YELTTFYDNH DMPRMNASDT GFIDANNWLF TSRGIPVVYQ
GSEIGFMRGK AEHQGNRNYL GQANIDLAKT HPIHNALTGI ANVRKSTPAL QNGLQVNLEF
KGDFAAFYRV IQKGDIAQTA LILLNKSDET HRFTISKYLD AGTWTEMRFK QDTQVIEQGE
SLVAEVPGHS VHVWVRDAKV MNESLNAELA RLMAFK
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