Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_2111 |
Symbol | |
ID | 4173790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | + |
Start bp | 2557218 |
End bp | 2558453 |
Gene Length | 1236 bp |
Protein Length | 411 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638055119 |
Product | phage integrase |
Protein accession | YP_661683 |
Protein GI | 109898428 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAATTA TATTTATGCC GCTATTTCCT CATGCTGAAC AACTGGACGT GGGGGTTGCT TATATTAATC AACAAGTGAT GGACTTTGAC CTATCAATAA AGGACGCCGC CTACAGTTAC GAGTTAGCCA TTGAGTATTT GAGTGAGAAC CGTTTTAACG CTAATAACTT TAAGTCGATC CGTAGTGAAC TAAATCTTTT ATTTAACTGG GCTTGGCGGG TGAAAGAGCT CTCCATTGCT GAAATAGACA GAGTGCAATT ACGTAAGTTT GTGGATTTTT GCAATGAGCC GCCATCAGAA CTTATCACAC ATGCGTCATA CCCGTTCTTT GTCGCGCACA AGCAAGACGG CACAATTGAG CCTAATCCCA AATGGCGGCC GTTCGTATTA AGAGACGCAG CATGCTATGT GCGAAAAACA TCCACCTTAA AAGCACAGCT GTCTCTATTA AGCGGGTTCT TTTTATTTTT AAGTGACATG GAATACTGTG ATAAGAATCC TGCGGCTGTG TTGTTGCGCA GGCTGAACGT AAATAATACG CACGTTATCG AGTCTTCTGA TGATGAAAAA GCGTTGAGTG AATTACAATG GCAGAGTGTC TGGCAGCAGG TTAATCATCT TGCGGATACT CAACCAGAAA AACACCAACG CACCCGCCTA CTTTTCGCCA TGTTGTACTT GCTCTATCCA AGGGTCTCTG AAATAGCCGC TAGGCCAGGC TATACGCCTA TGATGAGCAG CTTTATACGC CACAGAAGCG GGCATTGGGT GTTTAAAATT CCACGCAGTA AAGGTGGCAA AAGCCGTATG ATCCCCTGCC CTGATGAGTT AATTCAATGC TTGAGTCACT ATCGACGTTA TATAGGACTC AGTGATTTGC CTTTACCTAA TGAACAAGTT CCCTTGTTTG TGCGTCACAA AGCCGGGACT CACGGGCGCG AAACAGGCAT TTTAACCGCA CAGCTAGGTA TCGAATCTAT ACGTAGTATT GTGCGCTTCG TGTTTGATAC TACTGCAGAT AACTTAGAGG AAACAGCACC TCAAGAAGCT CACGAGCTTC GACAATTTAG CGTTCATTCG TTACGCCATA CAGGAATTAC CACCTCCATT ACTGCGGGGA CGCCGCTACA AGTGGTGATG AAAAACGCGG GGCATGCTGA CTTATCCACG CTTTCAATTT ACATCTCTAC GGATATTCAA CAACAAGCTG AGGCAACAGT GCCGCGTAAA TTATAA
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Protein sequence | MSIIFMPLFP HAEQLDVGVA YINQQVMDFD LSIKDAAYSY ELAIEYLSEN RFNANNFKSI RSELNLLFNW AWRVKELSIA EIDRVQLRKF VDFCNEPPSE LITHASYPFF VAHKQDGTIE PNPKWRPFVL RDAACYVRKT STLKAQLSLL SGFFLFLSDM EYCDKNPAAV LLRRLNVNNT HVIESSDDEK ALSELQWQSV WQQVNHLADT QPEKHQRTRL LFAMLYLLYP RVSEIAARPG YTPMMSSFIR HRSGHWVFKI PRSKGGKSRM IPCPDELIQC LSHYRRYIGL SDLPLPNEQV PLFVRHKAGT HGRETGILTA QLGIESIRSI VRFVFDTTAD NLEETAPQEA HELRQFSVHS LRHTGITTSI TAGTPLQVVM KNAGHADLST LSIYISTDIQ QQAEATVPRK L
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