Gene Patl_1923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPatl_1923 
Symbol 
ID4172769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudoalteromonas atlantica T6c 
KingdomBacteria 
Replicon accessionNC_008228 
Strand+ 
Start bp2329515 
End bp2330186 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content47% 
IMG OID638054931 
ProductTetR family transcriptional regulator 
Protein accessionYP_661495 
Protein GI109898240 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCAG CTAGGGCACA GGGTGGGGTG GCAACACGCA CAGCCAATAA ACTGAAACGC 
AAGCAGACAA TTCTGGATAC CGCACGCAGT ATTATCGCCA GTGGTGGGTT TTCTTCTTTT 
ACGTTGGCTG AGTTGGCCAG CTCAGCCAAT GTGACTGTGC CGACCATTCA TAATTTGATT 
GGTAACAAGG CTGAAGTACT GAAACACCTT GTGGTGGATA TGGTAGAGCG CACCGAACTC 
GTGCTGTTTT CAGATACGTT TAAAGATCCG ATTTCTACGG TTGAGTCGTT TACCGATAAC 
TTAATGTCAC TTTATCGAGA TGATGAAGCC TTTTATAAAG CTGCCTTTGT GGTCGGTGAG 
CAAGAGTCAT TATTTGAACA TGGGCATGCG GCAGGTATTT TCAAGAAATC CTTAAAACTG 
GCTTATCATG TATGCGTGGA CGCCAAAGAG CACGGCTTTT TAAACGGTGA GGTGGATACT 
GACTTACTCG CCGATCGTTT ATTCGCCAAC CAACGTATCG CTCGTTACGA CTGGATGCAT 
GGCTATATTG ACCTTGCAGA ATACCGCAAG CAGATGATTT GCGGCATGTT GTTAACGTTT 
GCTGCCGACG CTACCGACGC TTATCGCCCT GTGCTGTTAG CGAAAATCAA CAGCGTATTT 
GCCCAAGGGT AA
 
Protein sequence
MKAARAQGGV ATRTANKLKR KQTILDTARS IIASGGFSSF TLAELASSAN VTVPTIHNLI 
GNKAEVLKHL VVDMVERTEL VLFSDTFKDP ISTVESFTDN LMSLYRDDEA FYKAAFVVGE 
QESLFEHGHA AGIFKKSLKL AYHVCVDAKE HGFLNGEVDT DLLADRLFAN QRIARYDWMH 
GYIDLAEYRK QMICGMLLTF AADATDAYRP VLLAKINSVF AQG