Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1769 |
Symbol | |
ID | 4172017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 2122548 |
End bp | 2123942 |
Gene Length | 1395 bp |
Protein Length | 464 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054779 |
Product | diguanylate cyclase |
Protein accession | YP_661344 |
Protein GI | 109898089 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.128605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCCCATTA TGTTGCTTGT TATGGCGATT GCGGTAGCGA TTAGCGGTTA CTTAACGTTG TCCGACTCGG TAGAAGAACA AAGCCGACTG CAGCAGCAAT CCATGTCTCC AGCTTTTGAT TTAGTCACGC AGGAGTTGGT TAAGCCGCTG CACACTGCAC AAATACTTGC CAATACCCAA ACCTTGCGCC GATTGATGAA TGCTCAAATC ATCGATGACA AGGCGATACT CGATTTAGTC AAGCGTATGT CCATGGACTA CAACATGGAC TTTTTTGTTG CCAGTGAAAA CAGTCGCAAA CAATATAACG CCAATGGCAG CACACTAGAG TTAAAAGAAG GCGAAGTTGA ATGGTATTTT CGCGTTAAGG AACAAACTCA CAATGTGGCA GCAGCGTTAG GTAACAGACA AGATATTCAC ATTTATTTTG ACGTGAAAGT ATTCAATGAT CAGGGTGCAT TTCTCGGGTT TATTGGGGTG GGTAAACGCT TAAAAACGTT CTTGGACGCA TTTGATAGCT ACAAAGATGC TTTCGGTTAC GATTTCGTGT TTGTGGATAA TAATCAAGAT GTTGTACTGG CATCAGATCC TGACCTATTG GCTGATGGAA AACGTATTCT GTCAGTTGAG CAGCTATCTT GGTTTCAAGC ATTGACCGCA GAACAAAAAT TATTGCCAAG CTTGAATAAT ATCATCGTTA AGACCCCTGA TTATATCAAC CTCATCGCAC AGATAGACCT TAAGGCTTTG CACTGGAAGC TCTACCTTCT TACTCCGCTA TCATCACGTA AAACCGCCAG CACCGATGCA TACACCAGCC ATACCTCGTT TGTTTTGTTG ATTATTTTTG TGGTTTTTGT GACAGCTCAT GTCATTATTC GTTTTTTTGA GCGCGAGTCG GCTAAAAAAC ATCAGCTTGA TCCTCTTACT CAATTACATA ATCGTGAATA TGTGCAATGG CGTTTTGACA AAATAGTCAG AGCCAATCAA GAAGCCAGTT TAATTATGGT CGATGTGGAC AATTTTAAAC GTATCAATGA TTCCCGCGGG CATAATGTAG GCGATAAAGT GTTGGTAGAA TTTGCGGTGT TACTGCAAAG TGAATTACGT GAGCACGATG CGATAGCCCG CTGGGGCGGC GAAGAGTTTG TTATTTTATT GCCCGCGACA AAACTTGAGA CAGCCAAAGC GATTGCCCAG CGCACCTGCA CGCTAATTGC TGCTCAACCG ATTGCACTTC AGGATGAAGC TGATTTAGCG ATTTCAGCCA GCTTTGGCGT TACCTATGCC GTGAAAGCAC GTTCATTAGA GAGAATGGTA AAAGTCGCAG ATGACGCATT ATATGAGGCT AAGCACGCTG GTAAAAATTG CGTACGTGTT CATAAAATGA ATTAG
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Protein sequence | MPIMLLVMAI AVAISGYLTL SDSVEEQSRL QQQSMSPAFD LVTQELVKPL HTAQILANTQ TLRRLMNAQI IDDKAILDLV KRMSMDYNMD FFVASENSRK QYNANGSTLE LKEGEVEWYF RVKEQTHNVA AALGNRQDIH IYFDVKVFND QGAFLGFIGV GKRLKTFLDA FDSYKDAFGY DFVFVDNNQD VVLASDPDLL ADGKRILSVE QLSWFQALTA EQKLLPSLNN IIVKTPDYIN LIAQIDLKAL HWKLYLLTPL SSRKTASTDA YTSHTSFVLL IIFVVFVTAH VIIRFFERES AKKHQLDPLT QLHNREYVQW RFDKIVRANQ EASLIMVDVD NFKRINDSRG HNVGDKVLVE FAVLLQSELR EHDAIARWGG EEFVILLPAT KLETAKAIAQ RTCTLIAAQP IALQDEADLA ISASFGVTYA VKARSLERMV KVADDALYEA KHAGKNCVRV HKMN
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