| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_1117 |
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| Symbol | |
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| ID | 4172292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | + |
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| Start bp | 1352175 |
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| End bp | 1354994 |
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| Gene Length | 2820 bp |
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| Protein Length | 939 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638054123 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_660697 |
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| Protein GI | 109897442 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.199087 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGTCC ATAAGCAGTT CCGCCTTAAA AATAATATGT TTAGTAGTTT AGTACCAGGA
ATAGTGCTTC TGTCATGTTT TCCGTCATTC ACACATGCCC AGCAAGAAAC AAGTGAATTG
ACCAAGCAAG AAAAGCAAGC AGACGCATCT GATATTGAAC AGGTTGTCAT AACAGGTTCA
CGATTGCGTC AAGATGGGTC TATGGCTCCA ACTCCCGTCA CAGTTCTTTC AAGTGATGAA
ATTGAAGCTG GTGGCAAAAC CAATATCGCA GACTTTATTA ATGATTTGCC ACAATTACAA
AACTCAAGCA CGCCCCGTTC TATTGGTTTT ACGTCTAGCT CAGGTTTACA AGGCGCAAAT
TTACTGAATC TACGTAACCT TGGAACAAAC CGAACACTGG TTTTACTTGA CGGTCGCCGC
GTTGTTCCTG GGGTACCTAC GGGCTCCGTT GATTTAAGTC TGTTGCCAAG TGCATTGGTT
AAACGCGTAG ATATCGTAAC CGGTGGGGCT TCTGCAGCAT ATGGGGCTGA CGCAGTAGCT
GGCGTCGTAA ACTTAGTACT TGATACAAAA TACACAGGTG TAAAAGCGCA TATTCAAGGC
GGCAGTTCAT CTGAAGGTGA TGCAGAGAGT AAGTCCGGCT CAATTGCTGG AGGGACCAGT
TTTGCCAACG GTCGAGGTCA CGTGGTAGGT AACATTGAAT ACGCTGAAAA CAAGGCCGCT
TTTGCGAGTG AACGAGACTG GGCTAAAAGC AAAAGTATTG TCCCGAATCC AAATTACACC
CAAGGTGGCG CAGAGCATGA GCGCATTATT GTAGACAGTG GATTGGGCCT AGCAACACCA
GGGGGCTTAA TCATCAACAC TCCTCTGCGT GGTACGCAAT TTGACGACAA TGGTAACCCT
GTTCCCTTCG ATTTCGGCGC GCCCACAGGA AACGGGTTTA TCGCAGTCAG CCCAGACGCC
TATAACCCTA TTGCGTTGCA ACAACTTATT GCACCGTTAG AGCGATACAG CGGTTTTATG
CACGCCACTT ACGATCTGAC TGAAAACACG ACCATTTATG GTGAAGCGTC TTACGGTAAA
TCCACCGTTC GTCAAGAAAC GTTACCGTTA TTCCGCTTTG CAAATCAAGT GGTGCAGAAT
GATAACCCGT ATCTTGACGC TGTGACTGCG CAAAGACTAA GCGATGCCGG TGAAAGTACT
TTCGTACTCG GCAAATTAGG TGTGAACCTT GGTGTGGCTG AACCGGTTGG TGAAAGGGAA
ATTCAACGTT ACCTTGTGGG AGTTGACGGC GAACTAAGCG GTGATTGGTC GTGGAGCGCT
TATTATCAGT ATGGGGATGT CGATATTAAT GTTCGCGCCC AAAATAACCC AATCGTATCG
CGTTTTATTT TGGCTGCTGA TGCCGTTACC GATGATGCTG GTAACGTCGT ATGCCGATCA
TCGCTAAGCG ATTCAGGCAA TGGTTGTTTA CCTTACAATG TATTTGGCAA TCAACCTGTT
GCTGATGATG TAAAGGCCTA CCTTACTGGC ACTGCCGTGT CTAACCAAAA ATTAAAGCAA
CACGTTTGGT CAGCGAGCAT GACGGGTGTT GTTGCAGATC TTTGGGCTGG GCCGCTGACT
GCGGCTTTTG GCGCTGATTA TCGCAAAGAG TCCGGCTCAG GGGATGCTGA TGAGCAATCT
ATGAACAATG AATTTTTTGT GGGGAATTTC AAACCCTTCT CAGGCAAGGT AAATGTCAAA
GAGGGATATT TAGAACTTGG CTTACCGGTT CTGGATGATA TGGACTATGG AACAATAGAC
ATCAACTCTG CTATTCGCTG GACCGATTAT AGCAATAGTG GCTCAGTTAG AACGTGGAAG
GCAGGGGTTA TCTACTCTCC TATTGATGAG CTTCGTTTTC GCGTAACACG TTCTAGCGAT
ATTCGTGCGC CAAACATCAA CGATTTATTC AGTGGGGGAC TCGTTAGAGC CTCAGCAGTG
AATGACCCAT TCAGAGACGG TGAATCTACC CAGTATTTAG AGCGTTCAGG CGGTAACCCA
GATCTTCGCC CCGAAGAAGC TGACACTTTG ACTGTGGGAG GTTCATATGC CCCAGATTGG
TTGCCAGGTT TTAGCATGTC TGTAGATTAT TTCGATATAG ATATAAACGA TGCGATTGGC
GATATTTCAT CGCAAAATAT TCTCGACAAT TGCTTTGAAG GCCAAACAGA ATACTGCGCC
TATGTCGCGC GCAATAGTGA CGGTCTTGTC ACCCAGATAT CGAAACTACC ATTTAACTTT
CAAGCCGAGC AAATGACCGG CGTTGACATG GAATTCGCTT ACACCATGGA GCTAGGGGAG
GGCGAGTTAA AAATGCGCGC TTTCGCTACC CACGTTACCA AGCTTTCTAT AGGCGTACCA
GGAACGCTCA ACTTTGTTAG TCGCAAGGGA GAGGTTGGCA ACAATGCTGG TGGAGCTGAT
TCAGGTGCCC CAGATTGGCG CGGAATTGGC AACATTGGTT ATGAAACACA TGGCGGAACA
AATATTGGCG CCACATTGCG CTTCATTGGT GAAGCTAAAG TAGAGAGCGA CTTTGCCAGT
AATTACTTGC AGGGCAACGA CGTGCCGTCA CGCACTTATC TCGATTTGAA TATCTCCCAG
AAATTCGATT TATCCTCGGG CACCTTAAAG GTATTCGCTG TAGTCGATAA CGTATTCGAT
CGAGACCCTC CGGTGGTTGT TTCGCTTCAA GGTACGTCAC CATTAGATCT ACCTACCAAT
GGCGCTTTAT ACGACACAAT TGGACGAACT ATACGTATTG GGGCGCGTGT TGAGTTTTGA
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| Protein sequence | MSVHKQFRLK NNMFSSLVPG IVLLSCFPSF THAQQETSEL TKQEKQADAS DIEQVVITGS
RLRQDGSMAP TPVTVLSSDE IEAGGKTNIA DFINDLPQLQ NSSTPRSIGF TSSSGLQGAN
LLNLRNLGTN RTLVLLDGRR VVPGVPTGSV DLSLLPSALV KRVDIVTGGA SAAYGADAVA
GVVNLVLDTK YTGVKAHIQG GSSSEGDAES KSGSIAGGTS FANGRGHVVG NIEYAENKAA
FASERDWAKS KSIVPNPNYT QGGAEHERII VDSGLGLATP GGLIINTPLR GTQFDDNGNP
VPFDFGAPTG NGFIAVSPDA YNPIALQQLI APLERYSGFM HATYDLTENT TIYGEASYGK
STVRQETLPL FRFANQVVQN DNPYLDAVTA QRLSDAGEST FVLGKLGVNL GVAEPVGERE
IQRYLVGVDG ELSGDWSWSA YYQYGDVDIN VRAQNNPIVS RFILAADAVT DDAGNVVCRS
SLSDSGNGCL PYNVFGNQPV ADDVKAYLTG TAVSNQKLKQ HVWSASMTGV VADLWAGPLT
AAFGADYRKE SGSGDADEQS MNNEFFVGNF KPFSGKVNVK EGYLELGLPV LDDMDYGTID
INSAIRWTDY SNSGSVRTWK AGVIYSPIDE LRFRVTRSSD IRAPNINDLF SGGLVRASAV
NDPFRDGEST QYLERSGGNP DLRPEEADTL TVGGSYAPDW LPGFSMSVDY FDIDINDAIG
DISSQNILDN CFEGQTEYCA YVARNSDGLV TQISKLPFNF QAEQMTGVDM EFAYTMELGE
GELKMRAFAT HVTKLSIGVP GTLNFVSRKG EVGNNAGGAD SGAPDWRGIG NIGYETHGGT
NIGATLRFIG EAKVESDFAS NYLQGNDVPS RTYLDLNISQ KFDLSSGTLK VFAVVDNVFD
RDPPVVVSLQ GTSPLDLPTN GALYDTIGRT IRIGARVEF
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