Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Patl_1080 |
Symbol | |
ID | 4172619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudoalteromonas atlantica T6c |
Kingdom | Bacteria |
Replicon accession | NC_008228 |
Strand | - |
Start bp | 1295275 |
End bp | 1295922 |
Gene Length | 648 bp |
Protein Length | 215 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638054086 |
Product | periplasmic protein |
Protein accession | YP_660660 |
Protein GI | 109897405 |
COG category | [S] Function unknown |
COG ID | [COG3672] Predicted periplasmic protein |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTTTT TTTGTTATTT CATTACGATA GTGTTGATTT TATTCATGTT ACGCGCGGTA GCGGATAGCA ACATTATATT TAACGACGCG TTATTTAATA AAGTACGCAG CGAGTATGAC AATGAAGCAC TAGAGCGTGT TAGAGCATGG CAGGAACTCC TCAGCAATAA CCTCGATATT CCCGTTGATG AAAAACTCTA CAGGGTGAAC AATTTCTTCA ATGAGCTTGA ATTTGTCGAC GACATCAAGC ATTGGGGGAA AGACGATTAT TGGGCCACGC CAGTCGAGTT TTTAGCCTCC GATGGCGGAG ATTGCGAAGA CTTTGTAATA GCTAAATATT TCAGCTTAAA AGAATTGGGC GTTCCCGCCG AAAAATTACG CTTGATGTAT GTTACTGCAA CCCGCCTGCG CCAAGCCCAT ATGGTGCTGG CCTATTACGA ACAATCAAAT TCAGTGCCTT TGGTACTCGA TAATATTAAT AGACGTATTT TACCCGCTTC ACGCCGCCGC GACTTATTAC CCGTTTACAG CTTTAACGGT GACGGCCTTT GGTTGGCTAA AGAACAAGGC CGAGGCCAGA AAGTACAGCA AGGGGGTAAT AATAATTTAT GGAACGATTT AAACCAACGA ATGCAATTAG GCGATTAA
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Protein sequence | MRFFCYFITI VLILFMLRAV ADSNIIFNDA LFNKVRSEYD NEALERVRAW QELLSNNLDI PVDEKLYRVN NFFNELEFVD DIKHWGKDDY WATPVEFLAS DGGDCEDFVI AKYFSLKELG VPAEKLRLMY VTATRLRQAH MVLAYYEQSN SVPLVLDNIN RRILPASRRR DLLPVYSFNG DGLWLAKEQG RGQKVQQGGN NNLWNDLNQR MQLGD
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