| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Patl_0912 |
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| Symbol | |
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| ID | 4171966 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudoalteromonas atlantica T6c |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008228 |
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| Strand | - |
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| Start bp | 1084924 |
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| End bp | 1085823 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638053913 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_660492 |
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| Protein GI | 109897237 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA ATCAATTTAC GATGCAGGAT CCCAGAAGCC AGTATCACAT GAGCGATACT
GAAAAAGACA GCGAACAACC CGACCCCGGC TTAGATGAAA TATTAAAGCC TAAAGCGGAT
CATGGTGAAG ATACTTATCT TGGAAGTAAC AGGTTGAAAG GTCGAAAAGC ATTAATAACC
GGAGGGGACT CTGGCATTGG CAGAGCTGTT GCCATTGCGT TTGCAAGAGA GGGAGCTGAT
GTCGTTATTA ACTATCTGCC AAGTGAAGAA GAAGATGCAA AAGACACGTT ACAGGTCTTA
AAAGCAAGTG GCATTAACGC TTTCGGGATC CCTGGGGACA TATCTGACGA AGAGTTTTGC
AAAAGCTTAG TCACTCAGAG TGCTGAATGC CTCGGCTCAA TCGATATATT GGTAAACAAC
GCGGGGAAAC AACAGTTCGT CGCCGACTTA GAAGATTTAA CGACTGAGCA ATTCTGTCAA
ACTTACGCGA CTAATGTGTT TGGTATGTTT TGGATAACCA AAGCTGCGGT AAAACATATG
CCGCCGGGCG CCAGTATTAT CAACAGTACG TCAATTCAGA GTTATCAGCC TTCAGCTGGT
CTACTGGATT ATGCATCAAC TAAAGGTGCA ATCACCAGTT TCACTAAGGG CGTAGCAAAA
ATGCTGATTG ATAAAGGCAT TCGAGTTAAT GGCGTTGCTC CAGGTCCCAT TTGGACACCG
CTGCAGCAAA GTGGTGGACA ACCAGCAAAA AAATTACCGA CATTTGGTGA GAACGTTCCC
ATTGGCAGGC CTGGACAACC AGCTGAGTTA GCCCCTGTTT ATGTGTATTT AGCTTCACAA
GAATCTAGTT ATGTCACCGC TGAAATCATG GGTGTAACGG GTGGACAACA TCTCCCCTAA
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| Protein sequence | MKKNQFTMQD PRSQYHMSDT EKDSEQPDPG LDEILKPKAD HGEDTYLGSN RLKGRKALIT
GGDSGIGRAV AIAFAREGAD VVINYLPSEE EDAKDTLQVL KASGINAFGI PGDISDEEFC
KSLVTQSAEC LGSIDILVNN AGKQQFVADL EDLTTEQFCQ TYATNVFGMF WITKAAVKHM
PPGASIINST SIQSYQPSAG LLDYASTKGA ITSFTKGVAK MLIDKGIRVN GVAPGPIWTP
LQQSGGQPAK KLPTFGENVP IGRPGQPAEL APVYVYLASQ ESSYVTAEIM GVTGGQHLP
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