Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Paes_1176 |
Symbol | |
ID | 6459926 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prosthecochloris aestuarii DSM 271 |
Kingdom | Bacteria |
Replicon accession | NC_011059 |
Strand | - |
Start bp | 1284730 |
End bp | 1286199 |
Gene Length | 1470 bp |
Protein Length | 489 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642725167 |
Product | RNA polymerase, sigma 54 subunit, RpoN |
Protein accession | YP_002015852 |
Protein GI | 194333992 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.720482 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.377405 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGACT TTAAGCTTCA GCAAAGCCAG AGGGCCCAGC TTTCTGCACA GCAGATTCTT TCGAGTCAGC TTCTGCAGCT TCCCCTTCTT AACCTTGAGC AGCGGATATA CGATGAGCTG CAGGAAAACC CGCTGCTTGA ACTGATCGAA GAGAAGAACG AATCGGTCGA TGAAACAGGT GAGCAGAGCG GAGACGACGG CGATGACGGT GATGGAGAAG GGATGTTCGA CTCTGTTGAT CGTTTTGAAG CCAGGGATGA AAAGCGCCCT GAAAAGAACG AGCAGCCTAA AGAGAGCCAG GAAGGGGTAT TGCATTTTAC CGTCGATACG ACACCCAAAG AGAATTTTAT CCAGGCGATT CAGCAGGACT CTTTCGAAGA GCGAATGCTC AGAGATCTTT CTCTCCGGGA GGAAATCGGT TCAACAGAAC TGCTTATTGC ATCGGAAATT CTCGGTAATC TTGATGATGA CGGTTATCTT CAGGACGGTC TGGATATTGT TGCCGATGGC TTGTTGACCA ATCATGGCGT TGATGTTGAG CCGCGTGACA TTCAACGCGT GCTGCATATC ATCCAGCGGA TGGATCCCCC GGGGATTGCC GTAGCTTCGC TTCGCGAGCG TCTGCTCGTA CAACTGGAAC TGAACCAGGC AGCATCGGGA TCAGGAGGGA CAGCCATTAT TGCCAAAAAG CTTCTTGACA GCTATTTTGA TGATTTTCTC AACAACCGCT ATGAAAAAAT CATCAAAAGG ATGCAGATCA GGCCTGAACA GCTTGAAGCC GCGATTAAGG AGATTGCTGC GCTGGATCCC CACCCTTTTG TCGTCTATCA GGATACGGGG GACTATATCA TGCCTGATTT TATCGTGACC TATGAAAACG GGCGTCTGAC CGCAGCGCTC AATGATCGAA GTAATCTTTC TGTTCAGGTT TCGGACGCCT ATCGCGACGT CCTGAAAAAC AGGAAAATTC CACGAGGCGA CAAGCAGTTT GTTCGTCAGA AACTTAACCG GGCGAAGGAA TTCGCAAGTG CTATAGAGCA GCGACGTCAT ACTTTGTTGA GCGTTATAGA TGCTCTGATG CAGTTTCAGT ACGAATTTTT TGTTTCAGGA CCATCGATGC TGGTTCCTCT GGGAATGAAG GATGTTGCGG AAAAATCCGG TTTTGATCTT TCAACGATAA GCAGAGCGGT CAACGGCAAA TATGTTCAGA CCCGTTTCGG GACCTTTGAG TTGAAATACT TTTTCAGTGG AGGGACAACG ACGGACGAAG GCGAGGAGCT CTCAACCAAG ATCGTCAAAC AGTACCTTCA GGAGATGGTA AGTGCTGAAG ACTCAAAAAA ACCTCTGAGC GATGACAGAC TTGCACAGAT GCTGGAGGAA AAAGGCATAC GGATAGCCCG CAGAACGGTT GCAAAATACC GTGAACAAAT GCAAATTCCA GTAGCAAGGT TAAGAAAGAA AATATTTTAA
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Protein sequence | MPDFKLQQSQ RAQLSAQQIL SSQLLQLPLL NLEQRIYDEL QENPLLELIE EKNESVDETG EQSGDDGDDG DGEGMFDSVD RFEARDEKRP EKNEQPKESQ EGVLHFTVDT TPKENFIQAI QQDSFEERML RDLSLREEIG STELLIASEI LGNLDDDGYL QDGLDIVADG LLTNHGVDVE PRDIQRVLHI IQRMDPPGIA VASLRERLLV QLELNQAASG SGGTAIIAKK LLDSYFDDFL NNRYEKIIKR MQIRPEQLEA AIKEIAALDP HPFVVYQDTG DYIMPDFIVT YENGRLTAAL NDRSNLSVQV SDAYRDVLKN RKIPRGDKQF VRQKLNRAKE FASAIEQRRH TLLSVIDALM QFQYEFFVSG PSMLVPLGMK DVAEKSGFDL STISRAVNGK YVQTRFGTFE LKYFFSGGTT TDEGEELSTK IVKQYLQEMV SAEDSKKPLS DDRLAQMLEE KGIRIARRTV AKYREQMQIP VARLRKKIF
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