| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PXO_01579 |
|---|
| Symbol | |
|---|
| ID | 6306732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010717 |
|---|
| Strand | + |
|---|
| Start bp | 3330574 |
|---|
| End bp | 3333243 |
|---|
| Gene Length | 2670 bp |
|---|
| Protein Length | 889 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642640485 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001914342 |
|---|
| Protein GI | 188577413 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.419044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGAG ACATCATGAA ATACAGCACG ACCCTGCTGC CCAGCGCCAT TGCAATGTCG
CTGGCATTCG CTGCGCAAGC CCAGGACAGC GCTGGTGCGC AAGCCACCGA TCTGGACGCC
GTCCAGGTGG TCGGCATCCG TGCCAGCCTG GAAAAATCGC TCGATACCAA ACGCAACAAC
ACCGGCATTT CCGAGGCGAT CACCGCCGAG GACATCGGCA AATTCCCAAG TACCAACGTG
GCCGAAGCGC TCTCGCAGAT TCCCGGCGTC ACCTTGGACA GACGCTTCGG GCAAGGCGAG
CGCGTGAGTA TCGACGGCAC CGACCCCAGC CTCAATCTGT CGTTCCTGGA TAGGCACCCG
CTCGCACAGG CGATCTGGTT GTACGGCGAA CAGCCCAGCC GCGGTTTCGA TTACACCTTG
CTGGCCCCGC AGATCCTGGG CCGTGCAGAA ATCCTCAAGT CGTCCGAAGC GCGCCTCACC
GAAGGCAGCC TGGGCGGCAC GGTGCTGATG CATACACGAC AGCCGTTGGA TCTGAAGGTC
AACGAAGTGG CCGCGTCCAT CGGCTACAGC GATAGCGACC AAGCCAGTCA GGACAAACCA
AACGCCGCAC TGCTCTACAG CTGGAAGAAC GCGGCCGAGA CCTTCGGCAT CGCAGTGTCG
GCGCAGCATT ACGAAGAACG CGTGGACCGC CGCGGCATGG AAGTCTTTGG CTATGTACCG
GCCAGGACCT TCGCCAATGC CGCAGGTGGC GTGCCGGCCG ATGCGGATGT GCCGAACTCC
ATCAACGCGG CCTGGTTCCA GCAGGATCGC GAGCGCGATA GTGCCGTGGT CAACCTGCAG
CTCACGCCCA GCGATGCGCT GGAGTTCAAT CTAAGCGGCC TGTACATCAA CGAAAACTTC
GACAACTACA ACCAGTCGAT GTACAGCTTT CTCACCTGGA ATCCCGGGAC GGTGGCCGCG
GTGGACCAGC TCGGCGGCGT CCGTAACGGG GTGGTCACCA GTGGTCACTC CAGTGCCAAT
GCCAATGCCA ATGCCAATGC CAGCCCGCTA GGCGGCACGG TGATCTACGA CAACAACGTA
CGCGAATCGG AAGTAACCAC TAAAGGGCTG GACTTGCGCG GTGCCTTCCG CGGCGACGTT
TGGGGTTTAA ATGGACAGGT GGGACAGAGC AAGTCCGAGA ACACCGATCT CTCGCAATAC
TTCATCGAGC CGTTCTACAA CGGCGGTTTC AGCTGGGACA CCCGCCGCGG CATCCGCTTC
GACGATCCGG CGGCGGCACG CGACCCAGCC AACTGGGGTT CGGCCGGCGG CTGGTTCGGC
AACAACGGTA TTTTTTCCAC CGAGAGCAAA GACACGTACG GCCAGCTGGA TTTCAATCTG
CAGTTCGATG GGGTATTCAA TCAATTGCTG TTCGGCGTGC GCCACGGCAA GCATGACGAG
CGCTTCGAAC TGAATGTTTA TGGCGGCGTC ACCCCAGGCA AGTTGGCCGA TGTCGGCACC
ATCGGGCTGA CCGATCTGCA GGATTTCTAT CCCGATCACG GCCAGCATGT GCAGGCGGGC
CGCAACAATG TGCTGAACTG GATCCGCAAC AGTCCGATCG ACGACAACGC CCCCGACCCG
GCCAGCTATC TCAACAATAG CTGGGCGCTG GAGCAGACCA ACAACGCGGC CTATGCGCAG
CTGAACTTTT CCGGCGGCGG TCTGCGCGGC AATCTCGGCG TGCGCTATGT GGATTCCAAG
ACTGAAGGCA GCGGCTTCGT CTACAGCGGT ACGCCCTCGC TCGCCAACGC CGATAGCCTG
TGGCAGACCC GTACCCGCAA GGAAGACTTT CTGCTGCCTT CGCTGACGCT GTCGTACGAC
ACCAGCGACG ATTGGGTATT CCGCTTCGCT GCGGCCAAGG TCATCGCCTG GGCACCGTAC
AACCAGATGG TCAACAACAC CTTTCTCAAC GACACCACGT TGACCGGCAG CGGCGGCAAT
GCAGAGCTGT CGCCGTATGA ATCCTGGAAT TTCAACCTCT CTGCCGAGTA CTACTTCGCG
CAACAAGCGG TGGTGGCGTG GTCGCTGTTT TACAAGAAGA TCAACAACTA CATCGACACC
AGCGCCAGCG TGGAACGCCA ATACAACGCA CTACGCGATA CCGCACCGCA AAGCTGGGCG
CAGCTGGTGG GCAGCAATGG CTGTACCGCC GACGGCTATT GCGACTACAG CATCCAGCGG
CCGCGCAATG CCGGTGATGG CAAGGTCAAG GGCTTCAACA TCTCCTTCCA GCAGCCGTTC
GGCGACAGCG GCTTCGGCCT GACCGCCAAT TACACCTATG CTGCCGGCGA AAACAACACC
GGCGATGCCC TGCCCTATCA ATCGCGCAAC AGCATCGCCT TCAGCCCGTA CTACGAAAAA
GGCCCACTCA ATGCACGGCT GACCTACAAC TGGCGCGACA GCTATCTGGC GGGCGGGTAT
GTGGCCGGTG CGGCTCCGGC AAGCGTGGAC GACTACGCCG AACTCTGCGC CAGCGTCGGC
TATGCGTTCA GCCCGAACTG GTCGCTGCAG GTCGACGCGC AGAACCTGTT GGACGAGCAA
TACCTGCAGT ATCTGGGCGA CAAGGACCAT CTGACCGGCC GCTACAGGAG TGGACGCCGC
TACATGGCCA GCCTGCATCT GAAGTTTTAG
|
|---|
| Protein sequence | MRRDIMKYST TLLPSAIAMS LAFAAQAQDS AGAQATDLDA VQVVGIRASL EKSLDTKRNN
TGISEAITAE DIGKFPSTNV AEALSQIPGV TLDRRFGQGE RVSIDGTDPS LNLSFLDRHP
LAQAIWLYGE QPSRGFDYTL LAPQILGRAE ILKSSEARLT EGSLGGTVLM HTRQPLDLKV
NEVAASIGYS DSDQASQDKP NAALLYSWKN AAETFGIAVS AQHYEERVDR RGMEVFGYVP
ARTFANAAGG VPADADVPNS INAAWFQQDR ERDSAVVNLQ LTPSDALEFN LSGLYINENF
DNYNQSMYSF LTWNPGTVAA VDQLGGVRNG VVTSGHSSAN ANANANASPL GGTVIYDNNV
RESEVTTKGL DLRGAFRGDV WGLNGQVGQS KSENTDLSQY FIEPFYNGGF SWDTRRGIRF
DDPAAARDPA NWGSAGGWFG NNGIFSTESK DTYGQLDFNL QFDGVFNQLL FGVRHGKHDE
RFELNVYGGV TPGKLADVGT IGLTDLQDFY PDHGQHVQAG RNNVLNWIRN SPIDDNAPDP
ASYLNNSWAL EQTNNAAYAQ LNFSGGGLRG NLGVRYVDSK TEGSGFVYSG TPSLANADSL
WQTRTRKEDF LLPSLTLSYD TSDDWVFRFA AAKVIAWAPY NQMVNNTFLN DTTLTGSGGN
AELSPYESWN FNLSAEYYFA QQAVVAWSLF YKKINNYIDT SASVERQYNA LRDTAPQSWA
QLVGSNGCTA DGYCDYSIQR PRNAGDGKVK GFNISFQQPF GDSGFGLTAN YTYAAGENNT
GDALPYQSRN SIAFSPYYEK GPLNARLTYN WRDSYLAGGY VAGAAPASVD DYAELCASVG
YAFSPNWSLQ VDAQNLLDEQ YLQYLGDKDH LTGRYRSGRR YMASLHLKF
|
|---|
| |