| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5560 |
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| Symbol | |
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| ID | 1187252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 6334735 |
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| End bp | 6336954 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637396879 |
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| Product | TonB-dependent receptor |
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| Protein accession | NP_795284 |
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| Protein GI | 28872665 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGACCT ATAAATGTTA TGTTATAACA AATTTAGGTT ATCAAACGCA TTCCTCCCAA
GTGATCCTCC ATTCCATGAT CAGCCCTCTT TTCCAATCCC GTCGTCTAGT CACAACGCTC
TGCCTGCTGG CCAGCAGCGC GGGTTATGTA AACGCTTCCG AACAGGTAGA GCTTGCTCCG
TCCACGATAA GAGCTGCAGC TCAGCCCCAA GCGGAAGAAC ATCTCGATTC CGTTACCAAT
GCCGGTTCTC GCCTGCCATT GACGGCGTTA CAGACTCCGG CAAGCACCAG CTCGCTTGAC
GGATACGAGG TGCGTCGTCG CGGTGACGCG AATGTCCAGC AGGCCGTGGC TCGTAGCCCC
GGCATCACAG CTATCGGTAC GCCAGGCGAC GGAGGCACTG CGTTGTCCGC GCGTGGTTTC
ACAGGCCAGG GATCGGTGAT GCAGCTGTAT GACGGCAGCC GCATGTACAG CGCCATGGGC
ACGGTCACCC TGCCCGTGGA TACCTGGGCA ATCGAGCGCA TGGACGTGTT GCGCGGCCCG
GCCTCCGTGC TTTATGGCGA AGGTGCTACG GGAGCGGTAG TCAATGTCAT CCCCAAGAAG
CCTTTTGAAG GCGAGATCGA AAACCACCTG CGCCTTGGCT ACGGTTCGTA CGATAGCCAG
CAGACAGCGC TCGACAGCGG CGGCTCGCTA ACCGATCAGT TGAGCTATCG CTTGAACCTC
AATCAGCTGC GCAGCAACGG CTGGATCGGT GACGGCGACT CGCAAAGCAC GTTCTTCAGC
GGTGCGCTGC GCTGGCAGGC CAACGAAGAC CTGTCGTTCG CCCTCGCCCA CGACGGCGGC
AACCAGCGAC CGATGAACTA CTTCGGCGTG CCGCTGATCA ACGGCCGCTA CCACGAGGTC
CTGCGCGACA AGAACTACAA CATCGAGAAC GACAAACAAC ATTACGACGA TCAATGGACA
CGGCTGACCA CCGACTGGCA GGTGTCCGAT AATGTGACCT CATCCAACGA GCTTTACTAC
CTGACCTCGC ACCGTCGCTG GCAGAACGCC GAAAACTACA ACTGGGACGC TGCTACTCAA
CAGCTATCGC GCAGCGGCTA TTTCAGCATC AAGCACAACC AGGAACAGGT GGGCGATCGC
CAGACGTTCA CCTTCAAACA CAGTCTGGGC GGGCTGGACA GCCAGAGTGT GCTGGGAATG
GACGTCAACC GCATTCGCTT CAAGCTGACC AACAATTCGC CCTACAACGA TGTGAATCCG
GCGGGCGACC CGATAGATAT AGAGCACCCG GTGCCGGGGC TTTTTCAGAG TGCGTCACCT
TATTCCGAGC TGTTCAAAAG CACGACCCGG CAGCTGTCGG TATTCGGGGA AAACCGCACG
CAACTGAGCG ATCAACTCTC GGTGATCACA GGCGTGCGGC GTGACTATGC GGATATCGAA
CGCAATAACC TGCGTGATGA CAGCCGCACT GAAAAGGACC TGATCGGCAA CAACTGGAAA
ATCGGACTGG TTTACGCTCT GACGCCGGAC AGTTCCGCCT ACGCTCAATA TTCGACCAGC
ACCGATGGGG TTGGCAGCCT TGTCTCGCTC AACCCCACGC AGCAACAATT CGACCTCGCC
ACCGCCAGGC AATCGGAGGT GGGCTTCAAA CAGGCCCTGT GGGATCAGCG CCTGGAGTGG
ACGCTGGCGG CTTACCATAT CGTCAAGAAA AAGCTGCTCA CCACCGACGC CGGTAACCCT
GACCTCACCC AACAGGTCGG GCAGCAGTCT GCCGACGGGC TGGAGGCCAG CATGAAGCTG
CAATTGCCGC AGGACTGGGC TCTGACAGCC AATGCGGCCA TCGTGCGCGC CCGCTATGAC
CAATTTGATC AGGGCGTATC GGGCGTGTCT GTCTCGCGTG ACGGCAATAC ACCGGTCGAT
GTGCCAAGGC GCACGGCCAA CCTGTGGCTC GACAAACAGC TCGGCAGTTC GGTGCAGATC
GGCGGTGGGC TGCGCTATGT CGACAGCCGA TACGCCGACA TCGCCAACAG CGAAAAACTG
CCCGCCTACA CTGTGGCCGA TGCCAGCCTG TCATGGAAAG CACTGCGCAA CACCACCCTA
GGCCTGCAGG CGCGCAACCT GTTTGACCGT CAGTACGCAG CGAGTCAGTA CAACGAAGGT
CAGCAATGGA TTCTGGGCGA ACCCCGCTCG TTGTTCGTCA CAGCGGACCT GAGTTTCTGA
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| Protein sequence | MPTYKCYVIT NLGYQTHSSQ VILHSMISPL FQSRRLVTTL CLLASSAGYV NASEQVELAP
STIRAAAQPQ AEEHLDSVTN AGSRLPLTAL QTPASTSSLD GYEVRRRGDA NVQQAVARSP
GITAIGTPGD GGTALSARGF TGQGSVMQLY DGSRMYSAMG TVTLPVDTWA IERMDVLRGP
ASVLYGEGAT GAVVNVIPKK PFEGEIENHL RLGYGSYDSQ QTALDSGGSL TDQLSYRLNL
NQLRSNGWIG DGDSQSTFFS GALRWQANED LSFALAHDGG NQRPMNYFGV PLINGRYHEV
LRDKNYNIEN DKQHYDDQWT RLTTDWQVSD NVTSSNELYY LTSHRRWQNA ENYNWDAATQ
QLSRSGYFSI KHNQEQVGDR QTFTFKHSLG GLDSQSVLGM DVNRIRFKLT NNSPYNDVNP
AGDPIDIEHP VPGLFQSASP YSELFKSTTR QLSVFGENRT QLSDQLSVIT GVRRDYADIE
RNNLRDDSRT EKDLIGNNWK IGLVYALTPD SSAYAQYSTS TDGVGSLVSL NPTQQQFDLA
TARQSEVGFK QALWDQRLEW TLAAYHIVKK KLLTTDAGNP DLTQQVGQQS ADGLEASMKL
QLPQDWALTA NAAIVRARYD QFDQGVSGVS VSRDGNTPVD VPRRTANLWL DKQLGSSVQI
GGGLRYVDSR YADIANSEKL PAYTVADASL SWKALRNTTL GLQARNLFDR QYAASQYNEG
QQWILGEPRS LFVTADLSF
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