| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_5523 |
|---|
| Symbol | |
|---|
| ID | 1187215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 6289884 |
|---|
| End bp | 6290855 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637396842 |
|---|
| Product | cobalamin synthesis protein/P47K family protein |
|---|
| Protein accession | NP_795247 |
|---|
| Protein GI | 28872628 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0523] Putative GTPases (G3E family) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCAGA ACATCCCCAC GCACGTTATC GGCGGCCCGC TGGGTGCCGG CAAGACCAGC
CTGATCAAGC GCCTGCTAGC GCAGAAACCT GCCCATGAAC GCTGGGCGGT GCTGATCAAC
GAGTTCGGGC AGATCGGCCT GGACGCCGCG CTGCTGACCA CAACTGCCGA TGGTATCGCA
CTTGGTGAAG TGGCTGGCGG CTGCCTGTGC TGCGTCAACG GGGTGCCGTT CCAGATTGGT
CTGGGCCGAT TGCTGCGCAA GGCCCGGCCT GATCGATTGC TGATCGAGCC TTCGGGGCTG
GGGCACCCAG CGCAACTCAT GGCCCAACTG CGCGAAGCAC CCTGGCGTGG CGTGCTGACG
GTGCAGCCCG GCGTGATGGT GCTGGACGCA GCGGCGATGG CGACCGGCCA GCCGTTACCG
GCCACCCAGC AGGAAGCGCT GGCTGAGGCG GGGCTGGTGG TGATGAACAA ATCCGAACAA
CTGGATGAAG CGGCGCGTCA GGCCCTGGCA GAACAGATGA AGCCATGCGC GTTGCTGTGG
ACCCGGCATG CAGATCTGTC GCTGAGTCGT TTGCCGGGAT TCGTTGAGGG CACGGCTGTG
GATAAACACG CTGTGGATAA CCTGACGTTG CCCAACAGCA TCGGACGGTT GCCTGCCCTG
TGGGCTGACC CGAACGTGCC GATCTGCCTG AGCCAGACCA GCGCCGAAGG CTGGAGTGTG
GGCTGGCGTT GGCACCCCTC GCAGCAATTT GATCTGCAGC GCGTGCTGCA TTGGCTGGAA
GGCATGGCGT GGCGACGGGC GAAGGTGGTT ATCCACAGCG AGGGCGGCTG GTATTCCGGC
AATGTCCTGG AGGGTGCACC ACTGGCCTGG CAAATCAGCG AATGGCGACA GGATTCGCGC
CTGGAACTGA TCTTCTCGGC GCCGCAGGAT GTGGATACAT TGCAGGCGCA GATGGCGGGG
TGCCTGGCCT GA
|
|---|
| Protein sequence | MLQNIPTHVI GGPLGAGKTS LIKRLLAQKP AHERWAVLIN EFGQIGLDAA LLTTTADGIA
LGEVAGGCLC CVNGVPFQIG LGRLLRKARP DRLLIEPSGL GHPAQLMAQL REAPWRGVLT
VQPGVMVLDA AAMATGQPLP ATQQEALAEA GLVVMNKSEQ LDEAARQALA EQMKPCALLW
TRHADLSLSR LPGFVEGTAV DKHAVDNLTL PNSIGRLPAL WADPNVPICL SQTSAEGWSV
GWRWHPSQQF DLQRVLHWLE GMAWRRAKVV IHSEGGWYSG NVLEGAPLAW QISEWRQDSR
LELIFSAPQD VDTLQAQMAG CLA
|
|---|
| |