Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_5424 |
Symbol | |
ID | 1187111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 6165047 |
End bp | 6166564 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637396741 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | NP_795151 |
Protein GI | 28872532 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTTCACTC AGATGCCGCA GCCTCTGGCA TATGCCCAAG CCTTGTTGGC GCAATTCGCC AGCTTGGCGC GGGCGGTGAA TGGTGCCCAA TTGCTGGGTG ATTTTGTACG TAGCCTCGCT GAGCTCAGCG GCTGCGAGCT GTCGCAGCTT TATCTGCTGG ACGCCACTCA TAAGTGTTTG AAGATGAGAG CCGAGTGCCT GGACGGCACG CTGCAACCGC GGGAAGCGGC AAGCCTGCCG GTGGATTACA ACGGCGAACA GCTGTTGCAA TTTGCCCTTT GTCAGAATCG TGTGGTTTGC CTTGGCGAAC TGAGCGGCAG CCTGCACGAA ACCAGTTTTC TGCCGACGCA AAGTACGCCG TGGCAGTCGC TGCTTTGTGT CCCGGTCGTC AACCATCAGC AAGCCGTCGA AGGCTTGTTG TTGTGCGCAA GTCGCCGACA TGTCGATCTG CAGGGTTTTG CTGATTCTCT CGGTCAGTTC GGCTCGTTCG CACTGGGTCA ACTCAACCTG CTGCAACGTT TGCATAAGCC TGCGGATGAG GTACGACCGG CAGGGATCAC TATGCCAAGC GTCAGCGGAT ACGGTTTGAT CGGAAAAAGC GCAAGCATGC GTCAGACCTA CACGATGATC AGCAAGGTGC TGCACAGCCC GTACACTGTG TTGCTGCGGG GAGAGACAGG CACCGGCAAA GAAGTCGTTG CCCGGGCGAT TCACGACTTC GGTCCGCGTC GCTCTCAGCC TTTCATTGTT CAGAACTGTG CGGCATTTCC AGAGCACCTG CTTGAAAGCG AGCTTTTCGG CTATCGCAAA GGAGCCTTTA CAGGTGCCGA CAGTGATCGT ACCGGGCTGT TCGAGGCTGC CAATGGCGGC ACACTGTTGC TCGACGAAAT CGGCGACATT CCCCTGCCGC TGCAAGCCAA GCTGCTGCGC GTGCTGCAAG AGGGCGAGAT TCGCCCATTG GGTTGCAACG ATACGCGCAA GATCGACGTG CGTATTCTTG CAGCAACGCA TCGTGACCTG TCGGCGATGG TCAGCGAAGG CAAATTCCGC GAGGACTTGT ATTACCGTCT TGCGCAATTT CCCATTGAGC TGCCTGCCCT GCGCAATCGA GAGGGTGACA TTCTCGACCT GGCGCGGCAC TTCGTCGACA AGACGTGTGC GTTCTTGCAA CGTAGCCCTT TGCGCTGGTC GGACGCAGCT CTTGATCTCC TGTCCGGTTA TACGTTTCCC GGCAATGTGC GCGAACTCAA AGGCCTGGTC GAGCGTGCTG TCCTGCTCTG CGAGGGCAGC GAGTTGCTTG TGGAGCATTT CTCTCTGCGC CCGGAAGTTG TGCCTGAAGG CAGCAGCCTC AATCTGCGCG AGCGGCTGGA GCAGGTGGAG CGCAGCCTGT TGCTTGATTG CCTGCGCAAG AACGACGGCA ACCAGACTCT TTCCGCGCGT GAACTCGGCC TGCCGAGGCG CACGCTGCTT TACCGTTTGG GACGCCTGAA TATCAACCTG GGTGACTTAA ATGGTTAG
|
Protein sequence | MFTQMPQPLA YAQALLAQFA SLARAVNGAQ LLGDFVRSLA ELSGCELSQL YLLDATHKCL KMRAECLDGT LQPREAASLP VDYNGEQLLQ FALCQNRVVC LGELSGSLHE TSFLPTQSTP WQSLLCVPVV NHQQAVEGLL LCASRRHVDL QGFADSLGQF GSFALGQLNL LQRLHKPADE VRPAGITMPS VSGYGLIGKS ASMRQTYTMI SKVLHSPYTV LLRGETGTGK EVVARAIHDF GPRRSQPFIV QNCAAFPEHL LESELFGYRK GAFTGADSDR TGLFEAANGG TLLLDEIGDI PLPLQAKLLR VLQEGEIRPL GCNDTRKIDV RILAATHRDL SAMVSEGKFR EDLYYRLAQF PIELPALRNR EGDILDLARH FVDKTCAFLQ RSPLRWSDAA LDLLSGYTFP GNVRELKGLV ERAVLLCEGS ELLVEHFSLR PEVVPEGSSL NLRERLEQVE RSLLLDCLRK NDGNQTLSAR ELGLPRRTLL YRLGRLNINL GDLNG
|
| |