| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4856 |
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| Symbol | |
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| ID | 1186539 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 5501495 |
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| End bp | 5502247 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637396176 |
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| Product | TPR domain protein |
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| Protein accession | NP_794590 |
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| Protein GI | 28871971 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGCAG CAATTGCAGT ACTCGGATTC CTCATGCTCG GCGGGTGTGC CAGCGACGGT
CGCATGCTCT GGCCGCAGAC CTCGGCCCAG TCCGGCCAAT GCCCGAAGCT GACCTCGGAT
CAGGAGTTCT CCCTGAACCT GGCGCAGAAC ATGGCCGATG AAGGCCGCTT GCATGCCAGC
CTCGCCAACC TTGAAGGCAT GCCGGACAGC CTCGGCGAGG TGCGTTTGCG CAAGGCTCGG
GTATTACGGC TTTTGGGCAG TCATGAAGCC GAACCGCTGT ACCGCAGCCT GCTTGGCACC
TGTCGGGCCG CCGAGGGCGA GCACGGTCTG GGCCAACTGG CTGCAGCGCG CGGCGACAAT
ACACTGGCGC AGCAACACTT GCTCACCGCC AGCAAACTGG AACCCACCGA CGAAAAGATT
CGCAACGACT TAGGCGTCGT CTACCTCAAT CAATTGAAGC TGGAGCAGGC GCGTTTTCAG
TTTCTGACGG CCATGGAACT CAAACCGTCC GATTCGCTGG CGGCCGTCAA CCTGGCCACG
CTGCTGATTT ACCAGAACAA CTGGACACAA GCCGCCGAAC TGGCCTCCCG CGCCGGGCTG
ACACCCGAGC AGATCACCGA CGCCCAGGCG CGAGCCGCAA AAATAGGCAA GGCACAGGCC
ACACCACTGG CCTCTGTCGA GCGGGTTGCA CCGCTGCGTG ACGCACCACT GCCTGAACAG
ACAGACCGCC AGTCAACCGG AGTACGACCA TGA
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| Protein sequence | MKAAIAVLGF LMLGGCASDG RMLWPQTSAQ SGQCPKLTSD QEFSLNLAQN MADEGRLHAS
LANLEGMPDS LGEVRLRKAR VLRLLGSHEA EPLYRSLLGT CRAAEGEHGL GQLAAARGDN
TLAQQHLLTA SKLEPTDEKI RNDLGVVYLN QLKLEQARFQ FLTAMELKPS DSLAAVNLAT
LLIYQNNWTQ AAELASRAGL TPEQITDAQA RAAKIGKAQA TPLASVERVA PLRDAPLPEQ
TDRQSTGVRP
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