| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4196 |
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| Symbol | gcd |
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| ID | 1185876 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4726006 |
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| End bp | 4728249 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395542 |
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| Product | glucose dehydrogenase |
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| Protein accession | NP_793957 |
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| Protein GI | 28871338 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGGGC GTGCGGCTGC CCTGGGTCTG TACGCGCTGC TGCTGTTCGC AAGCACGGTA
TGGTCGTTGT GGGAAGTCGG CCTGGACTGG TGGCAACTGG TGCCGCGTCT GGCGCTATGG
TTTGCACTGG GCATCGTATT GCTGCTGCCG TGGTTCCGTC GGCCGCTGCT GCTCAACGGC
CCGGCGCGCA TGGGCACTGG CGCACTGAGC ATCGCTGTGG TGCTGGCCGG TCTGGCCGCG
CTGGCCAGCC AGTTCACCAA CCCTGGCCGT ATCGAAGGTC AACTGGACCG CGAAACGGCT
GGCACCACCA ACACCGCGCC GGCTATGCCT GACGGCGACT GGCAGTCCTA TGGACGTACC
GCTTTCGGCG ATCGCTATTC GCCACTGGCG CAAATCACGC CGCAAAACGT CAACACGCTG
CAGCCGGCCT GGACCTATCG CACGGGCGAT ATTCCAGGGC CGAACGATCC GGGCGAAACC
ACTGCCGAGA ACACCCCGCT CAAGGTCAAC GGCATGCTTT ACGTGTGCAC ACCGCACAGC
CAGGTGATCG CGCTTGATCC GGATTCAGGC AAGGAAATCT GGCGCTTTGA CCCTAAGCTC
AGCACTCAGA ATGCGGCCAA CTTCAAGGGT TGGGCGCATA TGACCTGCCG TGGCGTGACT
TACCACGACG ACGCCGCCTA TGCCGCCAGC GCTCCGGCGC AAAGCCCGGC AGCACCGGCC
GCAGTCAGCG CCACGTCAAG TGTCTGCCCA CGCAGAATCT TTCTGCCGAC TGCCGATACC
CGTCTGATCG CCCTGAACGC CGACACCGGC AAGATGTGCG AAGACTTTGG CAACAAGGGC
TCGGTTGACC TGACGGCCAA CATGGGCACG TTCGCACCGG GCGGCTACTA CTCCACTTCG
CCACCCGCAG TGACCAAGGA CCTGGTGATC ATCGGCGGCC ACGTGACCGA TAACGTTTCG
ATGGACGAAC CGTCCGGCGT GATCCGTGCG TACGACGTGC ACACCGGTCG TCTGGTCTGG
AACTGGGACA GCGGCAACCC GGAAGAAACG GCTCCGATAG CCGACGGCAA GATCTACACG
CGCAATTCGC CGAACATGTG GTCCATGTTC AGCGTCGATG AAAAGCTGGG CATGATCTAC
CTGCCGATGG GCAATCAGAC GCCGGACCAA TGGGGCGGCA ACCGTACCAA GGAGTCCGAG
AAGTACAGCG CGGGTCTGGT TGCACTGGAC ATCGCGACCG GCCGTGTACG CTGGGACTTC
CAGTTCACTC ACCATGACCT GTGGGACATG GACGTGGGCG GTCAACCGAC GCTGCTGGAC
ATGAAAACCG CTGATGGCGT GAAGCCTGCG GTATTGGCCT CGACCAAGCA GGGCAGCATC
TACGTGCTGG ATCGCAGCAC CGGCAAGCCT ATCGTGCCGG TCAACGAAGT GCCGGTTCCG
CAGGGCGCTG TCGCAGGTGA CTGGACTTCG CCGACTCAGC CCAAGTCCGA CCTGAACTTC
ATGCCGCCGC CGCTTAAAGA GCGCGACATG TGGGGCGTGA CACCGTTTGA CCAGATGATG
TGCCGGATCG ACTTCAAGTC GCTGCGTTAC GACGGCCCGT TTACGCCGCC ATCGTTGCAG
GGTTCGATTG TGTATCCGGG TAACTTCGGT GTGTTCGACT GGGGCGGCAT CTCTGTCGAT
CCGGTTCGCC AGATCGCCTT CGTCAATCCG AACTACATGG CGTTCCGCTC CAGGCTGGTG
CCTTCTGCCG AAGTTGAAGG CGGCCCGGGC CGCAAGAGCG AAACCGAAGG CGTGCAGCCG
AACAAGGGCG CACCGTATGG CGTGATTCTG GAACCACTGC TGTCACCGAT GGGCCTGCCG
TGTCAGGCAC CGGCATGGGG TTATGTGGCG GCGGTCGATC TGACCAACCA GAAGACCATC
TGGATGCACA AAAACGGCAC CGTGCGTGAC AGCTCGCCGA TCCCCATTCC GCTGACCATG
GGTGTTCCAA GCCTGGGGGG TACATTCACC ACCGCCAGCG GCCTGGCGTT CATGAGCGCC
ACGCTTGACC AGTACCTGCG TGCTTATGAC GTGCGTAACG GCAAGCAACT GTGGGAAGCC
CGCCTGCCAG CAGGCGCGCA AACCACACCG ATGACCTACA CGGGCAAGGA CGGTCAGCAA
TACGTGCTGG TCGTGGCCGG CGGTCACGGC TCACTGGGCA CCAAACAGGG TGACTACGTG
ATGGCGTTCA AACTGCCCAA GTAA
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| Protein sequence | MTGRAAALGL YALLLFASTV WSLWEVGLDW WQLVPRLALW FALGIVLLLP WFRRPLLLNG
PARMGTGALS IAVVLAGLAA LASQFTNPGR IEGQLDRETA GTTNTAPAMP DGDWQSYGRT
AFGDRYSPLA QITPQNVNTL QPAWTYRTGD IPGPNDPGET TAENTPLKVN GMLYVCTPHS
QVIALDPDSG KEIWRFDPKL STQNAANFKG WAHMTCRGVT YHDDAAYAAS APAQSPAAPA
AVSATSSVCP RRIFLPTADT RLIALNADTG KMCEDFGNKG SVDLTANMGT FAPGGYYSTS
PPAVTKDLVI IGGHVTDNVS MDEPSGVIRA YDVHTGRLVW NWDSGNPEET APIADGKIYT
RNSPNMWSMF SVDEKLGMIY LPMGNQTPDQ WGGNRTKESE KYSAGLVALD IATGRVRWDF
QFTHHDLWDM DVGGQPTLLD MKTADGVKPA VLASTKQGSI YVLDRSTGKP IVPVNEVPVP
QGAVAGDWTS PTQPKSDLNF MPPPLKERDM WGVTPFDQMM CRIDFKSLRY DGPFTPPSLQ
GSIVYPGNFG VFDWGGISVD PVRQIAFVNP NYMAFRSRLV PSAEVEGGPG RKSETEGVQP
NKGAPYGVIL EPLLSPMGLP CQAPAWGYVA AVDLTNQKTI WMHKNGTVRD SSPIPIPLTM
GVPSLGGTFT TASGLAFMSA TLDQYLRAYD VRNGKQLWEA RLPAGAQTTP MTYTGKDGQQ
YVLVVAGGHG SLGTKQGDYV MAFKLPK
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