| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4135 |
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| Symbol | |
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| ID | 1185815 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4661176 |
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| End bp | 4662891 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637395481 |
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| Product | DNA ligase, ATP-dependent |
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| Protein accession | NP_793896 |
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| Protein GI | 28871277 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGCCT TCGCCGAACT CTATGCACAG CTGGACGCCA CCACGTCGAG CAACGCCAAA
CTCGCCGCCA TGCGCGACTA TTTCGAAAAA GCGGCGGCAG AGGACGCAGC CTGGGCCGTG
TACTTCCTGT CCGGTGGACG CCCCAGGCAA CTGGTGCCGA CCCGCGTGCT GCGCGAGCAA
GCCATGACAC TGGCGAGCCT GCCTGAATGG TTGTTCGAAG AAAGCTATCA GGCCGTCGGC
GACCTGGCGG AAACCCTGTC ATTGCTGCTG CCGCAGGCCG ACCACAGCAA CGACGAAGGC
CTGGCCACGT GGATGGAAGA CAAGCTGCTG CCATTGCGCG GCCTGCCGCC CGAAGAGCTG
GCCGCGCGCT TGCCCATGTT CTGGTCGCAA CTGGACCGCA GCAGCTTGAT GGTTTGCATC
AAGCTGATCA CCGGCAGCTT TCGCGTCGGC GTATCGAAAT TGCTGGTCAC CCGCGCACTG
GCAGCGCTGG CTGACATCGA CAGCAAGCGC GTTGCGCAAA GGCTGGTCGG CTACACAGAC
CTGTCGCATC GGCCCAGCGC CGAGCGCTAC CTCAAGCTGA TCGCGCCTGA ATCGGAAGAT
GAACACGCGC AACGTGGCGG TCAGCCCTAT CCGTTCTTTC TTGCGCACTC CTTGCAGCAG
CCTGCCGACC AGTTCGAGAC GTTGCTGGGG CCGGCCGAGA ACTGGCAGGT GGAATGGAAA
TGGGACGGCA TCCGCGCACA ACTGGTCAAA CGTGACGGCA GGCTGTGGAT CTGGTCACGG
GGCGAAGAGC TGGTCACCGA CCGCTTCCCG GAACTGCACA GCCTGGCGCA ATGCCTGCCG
GACGGCACGG TGATCGACGG CGAAATCGTG GTCTGGAAAG CGCCTGACAT TAACCCGGAC
ATCAGCCACG ACAGCGATGC AGCGTTCGCG CTGGATAATG ACGCCCCGAA CGCTGCGCCC
TCAGTCCAGC CCTTCGCCCT GCTGCAACAA CGCATCGGCC GCAAGACACT GGGCAAGAAG
ATCCTCACTG ACATTCCGGT CGTGGTGCTG GCCTACGACC TGCTGGAATG GCAAGGCGCT
GACTGGCGCA GCCGCCCGCA ACACGAACGC CGCACGCAAC TGGAAACCTT GATCGATAGC
TGTCAGAGCG AGGTGCTGAT GCCCTCGCCG GTGCTCACCG GCAAAGACTG GCTCGACCTC
GCCACCCAGC GCGAAGCATC CCGCAGCCTG GGGGTCGAGG GCATGATGCT CAAGGCCCGC
GACTCGCTGT ACGGGGTCGG TCGCACCAAA GACATGGGCG TCTGGTGGAA GTGGAAAATC
GACCCGTTCA GCGTCGATGC CGTGCTGATC TATGCGCAAC GCGGTCATGG GCGACGCGCC
AGTCTGTACA GCGATTACAC GTTTGCCGTG TGGGACGGCC CGCCCGAAGC AAGCGAACGC
ACGCTGGTGC CGTTCGCCAA AGCCTACTCA GGGCTGACCG ACGAAGAAAT GCGCAAAGTG
GACGCAATTG TGCGCAAGAC CACCGTAGAG AAGTTCGGCC CGGTGAGCAG TGTGACGCCC
ACATTGGTGT TCGAGCTGGG TTTCGAGGGC ATCGCCTTGT CCAAGCGTCA CAAGAGCGGC
ATCGCCGTAC GCTTCCCGCG CATGCTGCGT TGGCGACAGG ATAAACCGGT CGCCGAGGCC
GATAGCCTGA CGACACTGCA GGACCTGCTG AACTGA
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| Protein sequence | MKAFAELYAQ LDATTSSNAK LAAMRDYFEK AAAEDAAWAV YFLSGGRPRQ LVPTRVLREQ
AMTLASLPEW LFEESYQAVG DLAETLSLLL PQADHSNDEG LATWMEDKLL PLRGLPPEEL
AARLPMFWSQ LDRSSLMVCI KLITGSFRVG VSKLLVTRAL AALADIDSKR VAQRLVGYTD
LSHRPSAERY LKLIAPESED EHAQRGGQPY PFFLAHSLQQ PADQFETLLG PAENWQVEWK
WDGIRAQLVK RDGRLWIWSR GEELVTDRFP ELHSLAQCLP DGTVIDGEIV VWKAPDINPD
ISHDSDAAFA LDNDAPNAAP SVQPFALLQQ RIGRKTLGKK ILTDIPVVVL AYDLLEWQGA
DWRSRPQHER RTQLETLIDS CQSEVLMPSP VLTGKDWLDL ATQREASRSL GVEGMMLKAR
DSLYGVGRTK DMGVWWKWKI DPFSVDAVLI YAQRGHGRRA SLYSDYTFAV WDGPPEASER
TLVPFAKAYS GLTDEEMRKV DAIVRKTTVE KFGPVSSVTP TLVFELGFEG IALSKRHKSG
IAVRFPRMLR WRQDKPVAEA DSLTTLQDLL N
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