Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3648 |
Symbol | plcA1 |
ID | 1185313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4108208 |
End bp | 4109890 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637394996 |
Product | acid phosphatase |
Protein accession | NP_793423 |
Protein GI | 28870804 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3511] Phospholipase C |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR03397] acid phosphatase, Burkholderia-type |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.989112 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGACA AACCAGAAGA CGAAAACACC AACGAGAACC CCGGCCGCCG TCGTTTTCTC GGTGGTATGG CAGCCTTGGG CGCAGGTGTG ACGCTCAGTG GTTACGTCTC GGCTCATGAA AGACCGCCCG CAGAGGCTGA AAAACATCAT CTGGTCGGAC CGGCGCTGGA CCGCGCACTG CGTGAAAACG TCAAGACCGT GGTGGTCATC TACGCCGAAA ACCGCAGCTT CAATAACCTG TTCGGGAATT TCCCGGGCGT GCAGAAACCC CTGTCTTCCG TCAGGCCTGC CGATTATGTG CAGCGCGACC GCAATGGCAC CCTGCTGGAC AAACTGCCGC CGGCCTGGGG CGGTGTCCTG CAAGTCGGGC CGCAGACCGT CGACGGCGTG ACCTACCCGG TGGGCGTGCA GTTTCAGGAA AACCTGCCTA ACGCGCCCTT CCCGCTCAAG GGACCCAACG CCGAGGACCT GCCGCTGAGC CTGGTCACCC GCGACCTGTG GCACGTTTTC TATCAGAACC AGATGCAGAT CAACGACGGC AAGAACGACC GGTTCGTCGC CTGGGCCGAT GCCGGCGGGC TGACCATGGG CAACTACGCG CAGACGCAGT ACTCGTTGCG TCTGTGGGAC GTCGCCAAGG AATTCGTGCT GTGCGATAAC TTCTTTCAGG GCGCATTCGG CGGTTCGTTC CTCAACCATC AATACCTGAT CTCGGCCACT GCGCCGATCT ACCCGAACGC CGCCGACTCG CCTGCAAAGT CGCAGATCGC CTCGTTGCAG AGCATGAATC CGCTGGACTC GCGCCTCAAA CCACTGGACA AGTCACCCGC CAGCGCCATG GAAGGGCCTC CACAGTTCGG CCCCAGCGCC ATCACCCCGG ACAACTACGC CGTCAACACC CTGGCCCCGC CGTACTGGCC AACCTGGCTG CGCGACCCGC AGAACCCGGA TTACTCCAAA CCGGACCTGG CCAACGTGCT GGTGCCGCAA AGCCACGAGC ACATCGGTGA CAAGCTGTCG AAAAGGAATG TCGACTGGGC CTGGTACGCC GGGGCCTGGC AAGTGACGCT GGATGAATTC AAGGACTCCA CCGGCATCCC GAAAATCCCC AATTTTCAAT ACCATCACCA GCCGTTCAAC TACTTCAAAC AGCAAGGCCC GCAGAACCCT GAAGAACGCA AAAAGCGCCT GCGCGATGGC GGCCTGGGCG ACGAATCGAG CACCAATCGC TTCCTCGCGG ACGCAGAAGC GGGCAAGTTG CCTGCCGTGG CCTTCTACAA ACCTCAGGGC AACCTGAACA TGCACGCCGG TTATGCCGAC GTGGCGTCGG GTGACCGGCA CATCGACCGG GTGATCAAGG TGCTGCGCAA CAGCCCGCAG TGGGACAACA TGGTCATCGT CGTCACGGTC GACGAGAACG GCGGCTGGTG GGACCACGTC GCACCGCCCA AAGGCGACCG CTTCGGCCCC GGCACGCGTA TTCCGGCACT GGTGATTTCA CCGTTCGCGC GCAAAGGCAA AGTGGACCAC ACGGTTTACG ACACGGCCTC GATCCTGCGC CTGATCACCC GCGTTCACGG TCTGGAAAAA CTCGACGGCC TGAAACGCCG CGACGAAGCG ATGATCGCGC GCGGCCAGGC GCCCATGGGC GACCTGACCA ACGCCTTGCA CTTTCCCGCC TGA
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Protein sequence | MSDKPEDENT NENPGRRRFL GGMAALGAGV TLSGYVSAHE RPPAEAEKHH LVGPALDRAL RENVKTVVVI YAENRSFNNL FGNFPGVQKP LSSVRPADYV QRDRNGTLLD KLPPAWGGVL QVGPQTVDGV TYPVGVQFQE NLPNAPFPLK GPNAEDLPLS LVTRDLWHVF YQNQMQINDG KNDRFVAWAD AGGLTMGNYA QTQYSLRLWD VAKEFVLCDN FFQGAFGGSF LNHQYLISAT APIYPNAADS PAKSQIASLQ SMNPLDSRLK PLDKSPASAM EGPPQFGPSA ITPDNYAVNT LAPPYWPTWL RDPQNPDYSK PDLANVLVPQ SHEHIGDKLS KRNVDWAWYA GAWQVTLDEF KDSTGIPKIP NFQYHHQPFN YFKQQGPQNP EERKKRLRDG GLGDESSTNR FLADAEAGKL PAVAFYKPQG NLNMHAGYAD VASGDRHIDR VIKVLRNSPQ WDNMVIVVTV DENGGWWDHV APPKGDRFGP GTRIPALVIS PFARKGKVDH TVYDTASILR LITRVHGLEK LDGLKRRDEA MIARGQAPMG DLTNALHFPA
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