| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3210 |
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| Symbol | |
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| ID | 1184867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3604010 |
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| End bp | 3606985 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637394562 |
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| Product | filamentous hemagglutinin family protein |
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| Protein accession | NP_792996 |
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| Protein GI | 28870377 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3210] Large exoproteins involved in heme utilization or adhesion |
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| TIGRFAM ID | [TIGR01731] adhesin HecA family 20-residue repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.379337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCGCAAG CCAGTGCCAT TACCTCGGCC GTTTCTGCCG CAGCGCAAAC TGTTACCCGA
GTAGAAGGCC TGCCCAGCAG CAACTTTGTT TCCAAACCGC AAAAATACCT GATCGAAACC
AACCCGGTCC TCACCGAACT CAAGCAGTTC CTGAGCTCGG ATTACCTGCT GGCAGGTCTG
GGCTACGACC CGGAAGTCAG CGCCAAGCGT CTGGGCGATG GTTTGTATGA ACAGCGCCTC
GTCCAGCAGG CAGTCGTAGC CCGAACCGGG CAGGCGTTCA TCGACGGCCA AACCTCAAAC
GAGGCCCAGT TCAAGTACCT GATGAACAAC GCCATCGCCA GCAAACAGCA GTTGAACCTG
GCGGTCGGCG TATCGCTGAG TTCACAACAA GTCGCTGCAC TGACCCACGA CATCGTCTGG
CTCGAAGAGC ATGAAGTGAA TGGCGAAATG GTACTGGTGC CTGTTCTCTA TCTGGCTCAG
GCCGACGGTC GCCTTGGTCC GACCGGTGCG TTGATTGCCG GTAACGACGT CTCGCTGATT
GCCGGGCAAA ACCTCGACAA CGTCGGCACC TTGCGTGCAG CCAATAATCT GTCGGCAGTG
GCGGGCAACA ACCTGGTCAA CACAGGGCTG ATAGAGGCTG GCAACCGTCT GGACCTGCTG
GCGGGTAATG ACCTGATCAA CACCGCTGGC GGCATCATCA AAGGCCGTGA TGTCTCACTG
ACCGCCATCA ATGGCGATGT GATCAATGAG CGCAGCATTA CTTCGATGGA CAACAGTGCG
CGCGGTCAGC GCCACAACGA GTTCGCCGAC AGTGCCGCGC GCATCGAAGC CGCCAATGAC
ATGAGCATTT CGGCGGGTCG CGACGTCATC AACAAAGGCA GCGTGCTGGA AAGCGGCCGC
GACATGAGCA TCCAGGCCGG ACGCGACGTC ACCATCGCCC CGACCGAAGT CACCAACAGC
CTGTTCTCGG ACAGCAAACA CAACAGCAGC GACATCACCC AACTGGGCTC CACCGCCAGT
GCCGGTCGCG ACCTGACTGT TCAGGCCGGT CGCGACATCT CCGTCATCGC CAGCCAGATC
GACGCCAAAC GCGACATCGC CATGGCCGCG ACCGAAAACC TCACCATCAG CTCGGCGGCG
GACGAAGAAC ACTCCCTGTC GAAAAGCAAA AAACTGACCC GCCAGGAAGA CCACGTCAGC
CAGATCGCTG CTGATCTTGA TGCAGGCGGC AGCGTTGCCT TGCAGGCTGG GCAGAACCTT
GCGGTGATCT CCAGCCGTAT TACGGCCGGG AAAGAGGCGT ATCTGGTAGC CGGCGATCAG
CTGGATATTT TGGCTGCGCA GGACAGTGAT TATTCGCTGT ACGACAAAAA GAAGAAGGGG
AGTTTTGGGG CAAAGAAAAC CAAGCGTGAC GAAATCACTG ATGTGAAAAA CATCGGCAGT
GAGATCACCA CGGGTGGTGA CTTGTTGCTG GCGAGCGGCG GAGATCAGAA GTATCAAGTT
GCGAAGCTTG AGAGCGGCAA GGACCTGACG ATTGATAGTG GCGGTGCGGT TACGTTTGAG
GGCGTGAAGG ACCTGCATCA GGAGAGTCAC GAGAAGAGCA AAAGTGACCT CGCCTGGAAC
TCGAGTAAAG GCAAGGGTAA CACCGACGAA ACCCTGCGCC AGAGCGAATT GGTGGCCAAG
GGCGAGTTGG CAATCCGGGC CGTGGAAGGT CTGAAAATCG ACATCAAGCA GGTTGACCAG
CAAAGCGTTA GTCAGACTAT TGATGCAATG GTCAAAGCGG ATCCGCAACT GGCGTGGCTC
AAGGAGGCAG AGCTGCGCGG TGACGTGGAT TGGCGGCAGG TCAAAGAAGT ACATGATTCG
TTGATAGGTA CTGCTGTAAA CGCTGCAGTT GTAGCAGGGT TAACGTCCGC CACCTCTCAG
GCAGTGATAA GCACAGTTAA TAATAAAGGT AACCTTGGCG CAGCGCTGAA AGATGTGACA
TCTGCTGAAA GCATGAAAGG CTACTTGGTA AGTGGGCTGG CGGCTGGGTT TGCCGCGGGA
ATTCTTGACC CTGCATATGG TGTTTCTCCA GAAAACACAG CGAAAGCAAC TCATGGCTTT
GATCTGGGAA GTGTCGATGG TTTTACAAAC TATGCAGGTT ATACGCTTGC GCAAGGAGGG
TTCAGCGCTG CAGCAAATAC TGCAATAAAT GGGGGAAGCC TGACGGATAA TCTTGCCCAA
GCTGCAATCA GTTCTGCCGC AGATGCTATG TCAGCAGGTA TCTACAACAA GCTGGGAACA
AAATTGGAGT TTTCAGGGCT TCCCTCAAAG CTGGCTGCGC ACGCTCTTGT TGGCGGATTG
ATCGCTGAGC TTGCTGGCGG TGATTTCCGT TCTGGAGCCT TGGCTGCTGG AGCGAATGAA
GCATTTGTAA ATTTGGTGGG CGACAAGATT TTTGTAGGGG AATCCCACGA TAAACTATTG
GCAATGACCT CACAGCTAGT TGGCTTAACA GTTGCGGCCG CCGCGGGTGG GACTGATAAA
GACCAAGCCG TCGCCGGTTG GGTTGCTCAG CAGGCCACGA CCTTCAATTA CCTTGAGCAC
AGTGAGAAAG AAGCGTTTAT AAAAGAAATG CTTGGCTGCG ATACTGACAA GTGTGCGAGA
GAAAAATGGG AGCAGGGCAA GTTTGATGAG GACAGCCAAG CAAACGTTCA ATACGCCAAC
GACATAGCTG GATCCCAGCG TGCAAGAGAG ACTAGAGATC GAGTTCTGGA TTCGCTGGGT
TCAATCCTGG ACATGAATTG CCCTACGAGT GCTTGCGAAG GTTACAAACA GCTCTTGATG
GAGCGCTCAC TGGGCACGCT GAAAAACCTG AACCAGGTTA TCAAGGACTG GGCTTCCGTC
GATCAGCGAC TCGGGTTGAT GGCAGGCGCG GCAGTGGGGG GGCAAGCCAA CTACAAATGC
GGTTCTACAG CCAGCAGAAG CGCTGGCGTT GACTAG
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| Protein sequence | MAQASAITSA VSAAAQTVTR VEGLPSSNFV SKPQKYLIET NPVLTELKQF LSSDYLLAGL
GYDPEVSAKR LGDGLYEQRL VQQAVVARTG QAFIDGQTSN EAQFKYLMNN AIASKQQLNL
AVGVSLSSQQ VAALTHDIVW LEEHEVNGEM VLVPVLYLAQ ADGRLGPTGA LIAGNDVSLI
AGQNLDNVGT LRAANNLSAV AGNNLVNTGL IEAGNRLDLL AGNDLINTAG GIIKGRDVSL
TAINGDVINE RSITSMDNSA RGQRHNEFAD SAARIEAAND MSISAGRDVI NKGSVLESGR
DMSIQAGRDV TIAPTEVTNS LFSDSKHNSS DITQLGSTAS AGRDLTVQAG RDISVIASQI
DAKRDIAMAA TENLTISSAA DEEHSLSKSK KLTRQEDHVS QIAADLDAGG SVALQAGQNL
AVISSRITAG KEAYLVAGDQ LDILAAQDSD YSLYDKKKKG SFGAKKTKRD EITDVKNIGS
EITTGGDLLL ASGGDQKYQV AKLESGKDLT IDSGGAVTFE GVKDLHQESH EKSKSDLAWN
SSKGKGNTDE TLRQSELVAK GELAIRAVEG LKIDIKQVDQ QSVSQTIDAM VKADPQLAWL
KEAELRGDVD WRQVKEVHDS LIGTAVNAAV VAGLTSATSQ AVISTVNNKG NLGAALKDVT
SAESMKGYLV SGLAAGFAAG ILDPAYGVSP ENTAKATHGF DLGSVDGFTN YAGYTLAQGG
FSAAANTAIN GGSLTDNLAQ AAISSAADAM SAGIYNKLGT KLEFSGLPSK LAAHALVGGL
IAELAGGDFR SGALAAGANE AFVNLVGDKI FVGESHDKLL AMTSQLVGLT VAAAAGGTDK
DQAVAGWVAQ QATTFNYLEH SEKEAFIKEM LGCDTDKCAR EKWEQGKFDE DSQANVQYAN
DIAGSQRARE TRDRVLDSLG SILDMNCPTS ACEGYKQLLM ERSLGTLKNL NQVIKDWASV
DQRLGLMAGA AVGGQANYKC GSTASRSAGV D
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