| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1392 |
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| Symbol | hrcU |
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| ID | 1183028 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1532093 |
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| End bp | 1533172 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637392764 |
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| Product | type III secretion protein HrcU |
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| Protein accession | NP_791219 |
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| Protein GI | 28868600 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
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| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCGAAA AAACAGAAAA AGCCACGCCC AAACAGATCC GCGACGCGCG GGAAAAGGGC
CAGGTCGGAC AAAGCCAGGA CCTCGGCAAG CTGCTGGTTC TTCTGGCTGT CAGTGAGGTC
ACGCTGGGCC TGGCCAATGA AAGCGTGAAT CGCCTGCAGG CTTTGCTGGC GCTGACCTTC
AAGGGTATTG AACGGCCTTT CATGTCGGCA GTCGAGCTGA TCGCCAGCGA AGGGTTGTCC
GTGGTACTGA GCTTTACCTT GTGCAGCGTG GGTCTGGCGA TGCTCATGCG CTTGATCAGC
AGTTGGGTGC AGATCGGCTT TCTCTTCGCG CCCAAGGCGT TGAAGCTCGA TATCAAAAAG
ATCGACCCCT TTTCCCACGC CAAACAGATG TTTTCCGGGC AGAACATCCT CAATCTGTTG
CTGAGCATCC TCAAGGCCGT GGCGATCGGA GCGACCTTGT ATACCCAGGT CAAGCCGGCA
TTGGGCACTC TGATCCTGTT GGCCAACAGC GATCTGGCCA CTTATCTGCA TGCGCTGATC
GAGCTGTTTC AGCATGTGCT CAGGGTGATT CTGGGGTTGC TGCTGGTCAT CGCCCTGATC
GACTTTGCCA TGCAGAAGTA TTTCCATGCC AAGAAGCTGC GCATGAGCCA CGAGGACATC
AAGAAGGAAT ACAAACAGTC CGAGGGCGAC CCGCATGTCA AGGGCCATCG CCGCCAACTG
GCCCATGAAA TTCTCAATCA GGAGCCAAGC GCTGCGCCGA AACCGGTGGA AGAAGCCGAC
ATGCTGCTGG TCAACCCGAC TCACTATGCG GTGGCGCTTT ACTACCGGCC TGGCGAGACG
CCATTGCCGA TGATTCACTG CAAGGGCGAG GACGAAGATG CCCTGGCGCT GATCGCACAG
GCAAAGAAAG CGGGCATTCC GGTCGTGCAA AGCATCTGGC TGGCGCGCAC GCTGTACAAG
GTCAACGTCG GAAAATACAT CCCCCGCCCT ACCCTGCTGG CCGTCGGCCA CATCTACAAA
GTGGTCCGCC AGCTGGAAGA GATCACTGAC GAAGTGATTC GTATCGACGA CGACATGTGA
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| Protein sequence | MSEKTEKATP KQIRDAREKG QVGQSQDLGK LLVLLAVSEV TLGLANESVN RLQALLALTF
KGIERPFMSA VELIASEGLS VVLSFTLCSV GLAMLMRLIS SWVQIGFLFA PKALKLDIKK
IDPFSHAKQM FSGQNILNLL LSILKAVAIG ATLYTQVKPA LGTLILLANS DLATYLHALI
ELFQHVLRVI LGLLLVIALI DFAMQKYFHA KKLRMSHEDI KKEYKQSEGD PHVKGHRRQL
AHEILNQEPS AAPKPVEEAD MLLVNPTHYA VALYYRPGET PLPMIHCKGE DEDALALIAQ
AKKAGIPVVQ SIWLARTLYK VNVGKYIPRP TLLAVGHIYK VVRQLEEITD EVIRIDDDM
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