Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1042 |
Symbol | |
ID | 1182676 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1141370 |
End bp | 1142032 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392421 |
Product | transcriptional activator ChrR |
Protein accession | NP_790878 |
Protein GI | 28868259 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3806] Anti-sigma factor |
TIGRFAM ID | [TIGR02451] anti-sigma factor, putative, ChrR family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.998121 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCCCAC TACATCATCC GGATGACGCA ACCCTGATCA GCTACGCCGC AGGGGCGTTG TCGCAGGTCA TCGCGGTAGT CACCGCTGCT CACCTGGAGC GCTGCGCCGA ATGCCGGGCA CGGCTGCGGC AGGCCGAACA GATCGGCGGC GTTTTGATGC AGCAGTCCAT CAGCCGTGTG GTGCCGCTCA AAAGCCGGAT GGCCATGCTG GCGCGCCTGG ACGAGCAGGA AACCAGCGTC GATTCGGTCA TGCACGCCAT GCCAGCGGCC AATCATGACC CTGACTTGCT TCCCCACTGC ATGCACGCGC ATTTCGGCCG GCACCTGAGC ACATTGAAGT GGAAAACCCT GATCCCCGGT GTTCAGCGCG TCAGCGCTCA GGGGATCGAA CAGGGCAACC TCATGCTGCT GAAAATCGCA CCCGGCGTCA GCATGCCGGT CCACAGCCAT GAAAGCGGCG AAATGACCAT GGTGCTCAAG GGCGCTTATC ACGACGTGCA GGGTGAATTC GGACTCAACG ATGTGGCCGA TCTGGACAGC CACATCCAGC ACCAGCCCAT CGCCTACCCT GATCGGGAAT GCATCTGTGT ATTGGCGGCA GAGTCAAAGC TGCGCTTCCA CGGCTGGATG GCGCGGATGA TGCAGCCGTT TTTCGGGATT TGA
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Protein sequence | MGPLHHPDDA TLISYAAGAL SQVIAVVTAA HLERCAECRA RLRQAEQIGG VLMQQSISRV VPLKSRMAML ARLDEQETSV DSVMHAMPAA NHDPDLLPHC MHAHFGRHLS TLKWKTLIPG VQRVSAQGIE QGNLMLLKIA PGVSMPVHSH ESGEMTMVLK GAYHDVQGEF GLNDVADLDS HIQHQPIAYP DRECICVLAA ESKLRFHGWM ARMMQPFFGI
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