Gene PSPTO_0816 details

Gene Information

• Locus tag: PSPTO_0816
• ID: 1182441
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 881303
• End bp: 881704
• Gene Length: 402 bp
• Protein Length: 133 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637392196
• Product: type IV pilus biogenesis protein
• Protein accession: NP_790663
• Protein GI: 28868044
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG4968] Tfp pilus assembly protein PilE
• TIGRFAM ID: [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAGCGA CATCCAGGGG CTTTACGTTA ATCGAACTCA TGATCGTCGT GGCGATTGTC 
GGTATTCTGG CCGCCATCGC GTACCCCAGT TATACCGAGT ACGTGAAGCG TACTCAGCGC 
TCGGCAGTCG CCAGTTTGCT TTCCGAACAG GTTCAAGCGC TGGAGCGTTT CTATTCGCAA 
AAGGGCAATT ACGCTGATTA CAAAGGTGTG GTTGGCGGCA ATGCCTATTA CACGATTACA 
CCGGTCCTCA ACGCCACTGA TTTCACCCTG ACAGCAGCCC CCACCGGGGG CACTATGATG 
GCCGGCGACA AATGCGGCAG TTTCGTCATC ACCAATACCG GTGCGCGCAG TAACTCAGGC 
GCGACCACTG GCGTGACCAC CAAAGACTGC TGGGGCCGCT AA 

 

Protein sequence

MRATSRGFTL IELMIVVAIV GILAAIAYPS YTEYVKRTQR SAVASLLSEQ VQALERFYSQ 
KGNYADYKGV VGGNAYYTIT PVLNATDFTL TAAPTGGTMM AGDKCGSFVI TNTGARSNSG 
ATTGVTTKDC WGR