Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0370 |
Symbol | |
ID | 1181979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 404865 |
End bp | 406241 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637391738 |
Product | MATE efflux family protein |
Protein accession | NP_790219 |
Protein GI | 28867600 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGTTA CCAAAGCAGT CTTCACCGAG GGCTCGGTGT TGCGGCATGT TGTGTTCATG ACCAGCACCA GTGCGACCAG CCTGTTGTCG ATCTTTCTGA TCGAAGTGCT GACCGTGGTT TATATCGCGA TGCTGCGCGA CGACAGTTTG CTGGCCGCGT TCGCGGTGGC CAAGACCCTG ATGTTTTTCA TTATCTCGAT GATTCTTGGC ATCGCCGTGG CAGTCTCTTC AACCGTGTCG AGAGCCTTGG GCAGTGGCGT GCCGGATCAG GCCAGGCGGC TCGCCAGCAG CGGCTTGCTG CTGGGCATCA TTGCCACTGT CTGTTGCGCT GTGCTTGAGC TGATATTTCT GGATTCAGCC ATACAAATGC TGGGCGGCGA GGGCAGTAGT TTCACCGCGG CGCGCGAGTA CCTTTGGCTA ACCCTTCCGG CCTCGGTGCT GGTTGCCGTC GAGCAACTGT GCGTGCAGAT ACTGCGCAGT GCAGGGTTCG GCAAACAGGC GATGTGGACC CTGCTGACTG CGACTGCTGC CGTCGCAATC GCCGACCCGC TGCTTATCAT CGTGTTCGAT CTGGGCCTGG CGGGTGCGGG GGTCGCCTAC CTGATATCGA GCCTGGTATC GGCGTGCCTG GGATTTTATT ACGTCCACCG TGTCGCCCGC CTGACCTGTC GGGTCAGCCT GACGCACCTG TCAGGCGACA TCAGCATTAT CGGCCGAACT GCCGTGCCCG CGGTGATCGG AAACCTGGCG ACACCGGTGG GCATGGCCTA CGTAATGGCT GCGATGGCGC CATTCGGTGC ACAGGCGCTG GCGGCGATCG GGGTGATCGA CAGGGTCATT CAGGTAGCGT TTTGCGTGGT GTTTGCCTTG CCCGGCGCGC TGATTCCGAT ACTGGGACAA AACCTCGGCG CAATGAACAC CGCCCGCGTC TCGCAAGCCG TAAAAACCAC GTACGGGTTG CTGATCGGCT ACGGGGCAAC CACCTCGCTG TTGCTGATTC TGCTGGCTGA GCCGTTGGCC AGACTGTTCC ATGTTTCCGG CGAAGGCCTG GTTGTTTTCT CCGCGTTCTG TCGATGGGGC GGTCTTCTCT GGACGCTGAT CGGGCTCCAG TTCATTGCCA CGTCTATCTT TCTCAGCGCA GGTCGACCGA TGTACGTGAC GTTGTTTGGC TGGCTGCGGG CCAGCCTGGG AACGGTGCCG TTCGTGTGGT ATGGCGCACA GGCATTCGGC AGTGTCGGTG TCATGCTCGG GCAACTGCTG GGCAACACCA TAGTGGCCTT TTGTGCCTGC TGGGTGGCGC ATCTGCTCAT GAAAAAGCGG ATAGGCAACA AGCTCGACCT AACAGGGAAC CGATCTCGCC ATCGAGGTAA CTCATAG
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Protein sequence | MAVTKAVFTE GSVLRHVVFM TSTSATSLLS IFLIEVLTVV YIAMLRDDSL LAAFAVAKTL MFFIISMILG IAVAVSSTVS RALGSGVPDQ ARRLASSGLL LGIIATVCCA VLELIFLDSA IQMLGGEGSS FTAAREYLWL TLPASVLVAV EQLCVQILRS AGFGKQAMWT LLTATAAVAI ADPLLIIVFD LGLAGAGVAY LISSLVSACL GFYYVHRVAR LTCRVSLTHL SGDISIIGRT AVPAVIGNLA TPVGMAYVMA AMAPFGAQAL AAIGVIDRVI QVAFCVVFAL PGALIPILGQ NLGAMNTARV SQAVKTTYGL LIGYGATTSL LLILLAEPLA RLFHVSGEGL VVFSAFCRWG GLLWTLIGLQ FIATSIFLSA GRPMYVTLFG WLRASLGTVP FVWYGAQAFG SVGVMLGQLL GNTIVAFCAC WVAHLLMKKR IGNKLDLTGN RSRHRGNS
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