Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PP_3988 |
Symbol | |
ID | 1046575 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida KT2440 |
Kingdom | Bacteria |
Replicon accession | NC_002947 |
Strand | - |
Start bp | 4497954 |
End bp | 4500002 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637147398 |
Product | hypothetical protein |
Protein accession | NP_746118 |
Protein GI | 26990693 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0323] DNA mismatch repair enzyme (predicted ATPase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.544109 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00814406 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGACGTCT CATTAGATGC AGTTGACGCT ACCGACGACT CTGAAGCGCT TATCAATGAG AAGTTGGCTG AGGCGGTTGG CAGCGGTGGA ACTGTAAAGG CCAGGCTCAT GACTGATGAG CGCGTCTTTG CGCGAATCAC GGATGGAATC TACCGTGATC CGGCTTCTGC ACTCCGGGAA CTTATTGCCA ACGGTTATGA TGCCGACGCT ACGGAAGTCA GGGTTGAGAC AGATTTCCCA CGATTTTCCA AAATATCCGT GCGTGACAAT GGCCGTGGGC TTACCAAGGA GACATTGGCT CATGTGATTT GCCATATTGG CGGGAGCTTA AAGAGAACGA AGCAAGGTCA AGCACACCAG ATTTCGAGTG AGGAAGACGC TTCTAGAAGT AAAGCAGGTC GCCCTTTGAT CGGGAAATTG GGCATCGGTT TGTTCTCCGT TTCCCAGATC ACCCATCATG TGGTGATTAT CTCGAAGGTC AAGGGCAGCA ATAAGAGGAT CTACTGTGAT ATTTTGCTGA TGCCTCAATC TGAGGCCCTT CTTGAAAAAG AAGAGGGTCA GCAGTTTGTT ACCGGCGAAG TTCACATTAA ATTTGTCGAT GCTGATGATG TTGACTCGCA TGGGACCGAA ATCTTGCTTC TTGATCTGCG GGAGCATGTC AAGGAATCGC TACTTTCCAA GATGACTTGG GATGCGTTGC GGGAGAAGCA AGAGCTTGAA AGCGATACAT CCAAAGATGA AGAGGCAGAA CTCGCGGTTG CCTTTGAGGA TGATGGTTTT GAAGGTGGCA TAAATATCCG CGAACCGCTT TTTCATATTG GTGAGATTGA TGTTGAACAT GGGGTCGTTC GAAAACCCTC AGTTCTGCCA TGGGATAACA ATACACCTGC GGATGAGAAG TTTCGTGCCT TGGTGGAAAA GCTCTCATCA TCGTTAAATG AGTCAGATCG TTCCAGCAAA GGGCCTAGTA CTCAAGAACA CCTTGATTAC TACTTAAGGA TGCTTTGGGT ATTGAGTCTT TCTCTACCGT TGCCCTATCT TAAGAAGCAC CCTTTCGATA TTGATGCCAA TGACGGGGCA TCGATTTTTC AAATTGATAA CAAACGGCGA GGGGCAGCGG TTGATGTGCT TCTCGAGGGC GATCAGACGA TCGCACAGCG CTATAAGCTA AAGTCCAGAG AGTCCCACTC TTTGGAATTT AATGTGTATG TGGACGGTGT TCGTCTCTAT CGCCCGTTGA GCTACGGGAA GTTCAAATCC CTAGATCATG CCGTGAGTAA GCCGTTGGTT TTTGTGGGTC GAGCCAAACC AGATTTGAGC GAGATACCCG AGCAATATCG TGGTGGGGAG TTAGAGTTTG AGGCGTATCT TTATTGGACG AAGAAAATTG TCCCCAAGGA GCACAATGGC GTGCTTATCA GAATCAATGG CGCCAGCGGA ACGTTGTTTG ATGAGAGTTT TTTGAAGTAT CAGGTTTCTG AGCTTACTAG GTTGCGGCAG ATTTCTGCAG AGATTTTTGT GATCAAAGGT TTAGATGCTG CGCTAAATAT TGATAGGGAA TCTTTCAATG TTTCGCATCC GCATTATCAG ATCATAAAAA ACTGGCTGCA CAGTGCATTG CGGCAGTTGA TGAATAAGCA TAAATATTTG TCTGGTGCTG TTAGCAAGAG TGCGCTTGAT GAAAGAAAAA AACAAACATT TGCTGAATTG CGAAACATTG TAACGGATCA GATAAAAAGC GTCGGTTTGA CGGCAGTTCC AGCAAGGGAA GTAGTTTATA GCTCGGGCAC TGTAGTGCAG GAGCGCTCGG TTGATCCTGG TCAGCCTGCT ACGCTTGAGT TAAACCGTGA AAAAGCCCTT GCTCCCATAT TCAAGTCTAA GAACTCTACG CCTAAAGAAA AGGTCCAGCA AATTCTCAAT GAAGAGAAAG CTAAGGCACT GGCATCAATT CTTAGTGCTT ATGGAGTTGA TCAGCACTTG GCAAAGGAGA AGCTGGAGGC TTTGATTTCA GCCATTCTGG AAGTGATGGT TCTGGAGATT CGAAAGTGA
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Protein sequence | MDVSLDAVDA TDDSEALINE KLAEAVGSGG TVKARLMTDE RVFARITDGI YRDPASALRE LIANGYDADA TEVRVETDFP RFSKISVRDN GRGLTKETLA HVICHIGGSL KRTKQGQAHQ ISSEEDASRS KAGRPLIGKL GIGLFSVSQI THHVVIISKV KGSNKRIYCD ILLMPQSEAL LEKEEGQQFV TGEVHIKFVD ADDVDSHGTE ILLLDLREHV KESLLSKMTW DALREKQELE SDTSKDEEAE LAVAFEDDGF EGGINIREPL FHIGEIDVEH GVVRKPSVLP WDNNTPADEK FRALVEKLSS SLNESDRSSK GPSTQEHLDY YLRMLWVLSL SLPLPYLKKH PFDIDANDGA SIFQIDNKRR GAAVDVLLEG DQTIAQRYKL KSRESHSLEF NVYVDGVRLY RPLSYGKFKS LDHAVSKPLV FVGRAKPDLS EIPEQYRGGE LEFEAYLYWT KKIVPKEHNG VLIRINGASG TLFDESFLKY QVSELTRLRQ ISAEIFVIKG LDAALNIDRE SFNVSHPHYQ IIKNWLHSAL RQLMNKHKYL SGAVSKSALD ERKKQTFAEL RNIVTDQIKS VGLTAVPARE VVYSSGTVVQ ERSVDPGQPA TLELNREKAL APIFKSKNST PKEKVQQILN EEKAKALASI LSAYGVDQHL AKEKLEALIS AILEVMVLEI RK
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