Gene PMN2A_0004 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMN2A_0004 
Symbol 
ID3605391 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. NATL2A 
KingdomBacteria 
Replicon accessionNC_007335 
Strand- 
Start bp554590 
End bp555684 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content37% 
IMG OID637686858 
Productputative CaCA family sodium/calcium exchanger 
Protein accessionYP_291199 
Protein GI72381844 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0530] Ca2+/Na+ antiporter 
TIGRFAM ID[TIGR00367] K+-dependent Na+/Ca+ exchanger related-protein 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATCAA TATTATTGTC ATTTTTAGAG CTTATTGCTG GGATACTTTT ACTTTTTAGC 
GGCGGGGAGT TCTTTATTCA AGGATCTGTA GCTTTAGCCT TAATCCTTGG GATTCCTCAA 
CTAGTCATTG GTTTAACAAT AGTATCTCTA GGGACAAGTG CACCTGAACT ATTTGTGAGT 
GTCAACTCCT CCCTCAATGG ATCAGATAGT CTAGCTTTGA GCAACATTGT TGGCAGCAAT 
ATTTTCAATG TGATGGTAGT TCTCGGAGGA AGTGCACTTT TACGACCATT AAGAGTTGAA 
AGTCGTCTTG TAAGAAGAGA CATTCCTCTT CTTTTAGCAG TCTCAACTGC CGTTTGGGGG 
ATGGCCGCTT CAGAGCTGAT AACTTGGCAA TTTGGAGTAG CTTTAATAGT TGCGCTAATA 
ATAAATACCA CTTGGGAAAT TCGTACAGCA AGAGAGGAAC CTCAAAAAAC CCAAGAAGCA 
GAGCCAGAAA TCAATATAGA AAAAGACTCA ACCAGTTTAT TAAAGGCAGG CGTGAAATTA 
TTAGGTGGTA TTTTCTTGCT AACTCTTGGA TCACGACTTT TAATAGAAGG CGCATCTACA 
ATTGCAGGAT TGTTAGGGGT AAGCGAAGCT ATAATTGGGT TAACGATAGT TTCACTGGGC 
ACTTCTTTAC CTGAGTTAAT CACGTCATTA GTGGCCGCTA TTCGTGGTCA AACTGATCTA 
GCGATAGGCA ACGTAATTGG AAGTTGTTTA TTAAATCAAT TACTAGTTTT AGGTAGCTGT 
TCTCTATTAT CTGGAGGCAG TGGTTTAGTG GTTGAGAGTT TACTAATAAC TAAGGATATT 
CCTATCATGG TAATTACTAC ACTTGCGTGC ATGCCAATTT TTTGGACAAA AGGAATAATA 
AGTCGAGGAG AAGGTGGCGT TTTATTAGGA TTGTATATGC TTTATATTGC AGACAAAATA 
ATACCTCTAA CTCTACCAAC TTTACATACA GCATTCAAAG AATTAGTTTT TATAGCTATA 
TTATTAGCAA TAACAATAAT TATATACAAA ACAATTGCTT ACTGGTTAAG ACTAAGAAAA 
AGTTCTAATA ACTAA
 
Protein sequence
MPSILLSFLE LIAGILLLFS GGEFFIQGSV ALALILGIPQ LVIGLTIVSL GTSAPELFVS 
VNSSLNGSDS LALSNIVGSN IFNVMVVLGG SALLRPLRVE SRLVRRDIPL LLAVSTAVWG 
MAASELITWQ FGVALIVALI INTTWEIRTA REEPQKTQEA EPEINIEKDS TSLLKAGVKL 
LGGIFLLTLG SRLLIEGAST IAGLLGVSEA IIGLTIVSLG TSLPELITSL VAAIRGQTDL 
AIGNVIGSCL LNQLLVLGSC SLLSGGSGLV VESLLITKDI PIMVITTLAC MPIFWTKGII 
SRGEGGVLLG LYMLYIADKI IPLTLPTLHT AFKELVFIAI LLAITIIIYK TIAYWLRLRK 
SSNN