Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_86905 |
Symbol | SEC18 |
ID | 4851917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009068 |
Strand | - |
Start bp | 3176308 |
End bp | 3179065 |
Gene Length | 2758 bp |
Protein Length | 794 aa |
Translation table | |
GC content | 44% |
IMG OID | 640393625 |
Product | cytoplasmic protein involved in protein transport between ER and Golgi ATPase |
Protein accession | XP_001387178 |
Protein GI | 126276014 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0464] ATPases of the AAA+ class |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.900491 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TACAATCACA ATCACAATCG GCTTAGCTAA GAATAGGAAA GTGTTGTGAC TTTGTATTAG AAGACTTCCG TGCATTTTTC CCTTCCACAA CCAGAATTCA CTATGGAAAG ACTTGGATTC CGTAGAGTCT CCAACAGCCC CACACAGCCT GGGGCCCCTA CCATCACCCA CCTGAGGCCC AATGTTGCCA CCTCGGGTCC GGTTTCAAAC GCCGGCGTAC CTCACTTCAA GAAGAGCTTT GTAGTCGACC AGTCTCCTGA CAATCGGATC GTTTCATCGA ACTGTGTTGC AGTAAATCCT GGCGACTTTG CCAGTTTTCC CAATAGAACT CCATTTCTGT TTGACGCGGA GTTTGTGTAT TCGATCGAGA AAGACGAACG CATGGCCCCT GGTTCTGTTG GGATGGGTGG GAACATTCGA ACATGGGGCT CCTGGTCCAG AGGTCAGCTG ATAACTGTAG AATCGTATAA TATCTTTGCC AACGGCAATA CCCAGCAGTC GTACTTGGGC CAAGTCGAAA TTCTCATAGA CTTCAAACAA AAGAGTAAAG CCAGCTCTGC TGCAATCGTT CATGACGAAC TTGTGGACAT ATTTTTGAAG AGCTATGAAA ACCAGATCTT GCAACCAACG CAGAAAATCA TCATGGACTT CAAGGGTGTC TACTATGAGT TGTATATTTC ATCTGTACAG GTGATCGATA TTAGTAACAA CGATCACTTA CCTTCGATTA AAGACCTGAC TGATTTGGCT TCAAAAGGCA TCTTGCTCCG TCAAACCGAT GTCATTTTCT ATCCTGAGGA CAAGTCGCTC ATCAACTTGG TCAAACCTAC TTCTTTGAAA CAGAAGATTC TTGGAGGTTC CACGCACCAC AAGCCACGTG CCCGCAAGCA GCTTATCAAC TCCGACTTCA AGCTCGAGGA TTTGGGCATT GGTGGTTTGG ATGCCGAGTT CCAGGACATC TTCAGAAGAG CATTCAACAG TAGAATATTG CCTCCAGAGA TCGCTGAGAA GTTGGACTAC AAGCACTGTA AGGGTTTGTT ACTCTTCGGA CCTCCAGGAA CAGGAAAAAC GCTTATAGCT CGTAAGTTGA GTAAAATGTT GAATGGTAGA GAACCCAAGA TCGTCAACGG GCCGGAGATG TTGAGTAAAT ACGTGGGGGC ATCTGAAGAA AACATCCGTA ATTTGTTTAA GGATGCCGAA CAGGAGTACA AACAAAAGGG CGAAGATTCC GACTTGCACG TTATAATTTT TGACGAGTTG GATTCTGTTT TCAAGCAGAG AGGCTCAGGT AAATCCGACG GAACTGGTGT AGGCGACAAT GTAGTCAACC AATTGTTGTC CAAAATGGAT GGTGTAGATC AATTGAATAA CATCTTGGTG ATCGGTATGA CGAATAGGTT GGACTTAATC GATACGGCCT TGTTGAGACC AGGCAGATTT GAGATCCAGA TCGAAATCTC GTTGCCAGAC GAAAAGGGTA GAAGAGATAT CTTGTTGATT CACACGGCCA AGTTGCGAGA AAATGATTTG TTGACCTCAG ATATCGACTT TGACGAACTT TCTTCGCTCA CAAAGAACTT CACTGGTGCC GAGTTGGAAG GTTTGTGCAA TTCCGCCAAG TCTTTCGCAA TCACCAGACA CGTGAAGTCT GGCTCTATAG CTCAGATCGA CGTAGACTCG ATCAGAAACT TAAAGATTAC TCGTAATGAC TTCTTGCTAG CATTGAGCGA AGTCAAGCCG GCTTTCGGTA CAGATGAGGA GGACTTGACT CTCGCTGCTA GACACGGTAT CATCCAGTTC AGCCACTTCA TCAAGAACAT CTTCGAGACT GGCCAGTCTA TCATTGACTT GGTCAAGTCC AGCGAAACTG AAACTTTACG TAGTCTTTTG TTATATGGGC CACCTGGTGT AGGTAAAACA GCCATAGCCA GTACTCTAGC TCTCAATTCT GATTTTCCTT TCATCAAGAT GTTGTCGGCT GAGAGTTTGG CTGGTATGGG TGAGTTGCAG AAGATTCAGT ATATAGATAA CACCTTCAGA GACGTCTACA AGTCGCCCTT GAACATCTTG CTCATCGACA AGATCGAGAC CTTGATCAAT TACGTACCTA TTGGACCCAG GTTCTCCAAC GATATTCTCC AGTTGTTAAT GGTTTATTTA ACCAAGAGTC CTCCAAAGGG CAGAAGATTG TTGATCATTG GTACTACTTC GCAATACTCA GTGTTGAAGC ACATGAATTT GGTAGACTCG TTTAACGACG CTGTGGCTGT TCCACCAATC AGAACGGTTG AAGAAATCGG CAAGGTATTG GATAAGTTGG GCTTCATGAG CGCTTCAGAG AGACACGAGA TCTTGAACCA GTTGGGCAAG TTCGATGTCA ACATCGGCAT CAAGAGGTTA ATCGACTCCA TCATGGTTTC GGCTTACGCT AAAGAAGGAG TCGATGATGT TGTTACGAAT ATCATGGATA AAATGAGACT TGAATAGTTT GTTCGGTTTG CCTTTGCAAG AAATATATAT AATACAGTGT ACGTTTCAAA AATATAATGA AGTTACATGA GACTTTAGTT GGCTTCTTTG CTCTCTTAAT AGGCTTGACT TTTGGAAGTT CCCTTACTTG TGTATTATTC TTGATGTTTC ATTGTTATCT TATCAATTCA AATGGAATGG CCAACAATTT AAATTCAGTG ATCGGAATAT CATTAAGTAG GCTTGATCTA TAGTTTAGGT ATTTGACGTT TTTTTTATAT TTCCTTGG
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Protein sequence | MERLGFRRVS NSPTQPGAPT ITHLRPNVAT SGPVSNAGVP HFKKSFVVDQ SPDNRIVSSN CVAVNPGDFA SFPNRTPFLF DAEFVYSIEK DERMAPGSVG MGGNIRTWGS WSRGQLITVE SYNIFANGNT QQSYLGQVEI LIDFKQKSKA SSAAIVHDEL VDIFLKSYEN QILQPTQKII MDFKGVYYEL YISSVQVIDI SNNDHLPSIK DLTDLASKGI LLRQTDVIFY PEDKSLINLV KPTSLKQKIL GGSTHHKPRA RKQLINSDFK LEDLGIGGLD AEFQDIFRRA FNSRILPPEI AEKLDYKHCK GLLLFGPPGT GKTLIARKLS KMLNGREPKI VNGPEMLSKY VGASEENIRN LFKDAEQEYK QKGEDSDLHV IIFDELDSVF KQRGSGKSDG TGVGDNVVNQ LLSKMDGVDQ LNNILVIGMT NRLDLIDTAL LRPGRFEIQI EISLPDEKGR RDILLIHTAK LRENDLLTSD IDFDELSSLT KNFTGAELEG LCNSAKSFAI TRHVKSGSIA QIDVDSIRNL KITRNDFLLA LSEVKPAFGT DEEDLTLAAR HGIIQFSHFI KNIFETGQSI IDLVKSSETE TLRSLLLYGP PGVGKTAIAS TLALNSDFPF IKMLSAESLA GMGELQKIQY IDNTFRDVYK SPLNILLIDK IETLINYVPI GPRFSNDILQ LLMVYLTKSP PKGRRLLIIG TTSQYSVLKH MNLVDSFNDA VAVPPIRTVE EIGKVLDKLG FMSASERHEI LNQLGKFDVN IGIKRLIDSI MVSAYAKEGV DDVVTNIMDK MRLE
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