Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_83216 |
Symbol | RRP5 |
ID | 4838895 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | - |
Start bp | 739164 |
End bp | 744437 |
Gene Length | 5274 bp |
Protein Length | 1699 aa |
Translation table | 12 |
GC content | 43% |
IMG OID | 640390210 |
Product | Part of small ribosomal subunit (SSU) processosome (contains U3 snoRNA) |
Protein accession | XP_001384440 |
Protein GI | 150865289 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0841775 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTCAAGGCTT TCAATATGCT GGAAACTTAC GGGTCCAAGT CGGTGCTCAG CAGCAGCGAA GTCTCCTTCC CAAGAGGTGG AGCCACTGCC TTGACTCCAC TTGAAGTGAA GGAAATCTCC AATGAAGCCA CGAAAGATGT TCTTTTTGAA GCCGCTAATT CTGCAAAGAG AACTGCTTCC AGCAAGACAG ACAGACCAGC CAAGAAGGCA AGAAGAGCTC CTAAGAAAAA GAGCCAAGAA GATGCAGACG AAGCAGAAGA AGACTCAAAA GTCCAGATCG AGAATATCAC CTTTAAGAGT TTGATTCCAG GCACTCTCGT ATTGGGTCAG ATTACTGCTG TAGGAAAATT GGATATCACT TTGGCTCTTG GCGATAACCT CGTTGGTTAC ATCCCCATTA CGTCCATAAG CGAAGAGTTG ACCATCCAAA TTGAACAGTA CGAAAAGGCC GAAGATTCAG ATGAAGAATC AGAAGACGAA GAAGATGAAC AAGAATCGGA AGACGGCAAG ATAAGAACCG CAACATTAAA GAGCAAGTCA CGCCCAGAAT TCCCCGAGCT CAAGACGTTA TTCTCCATTG GCCAATGGTT GAGGGCCAAG GTAGTCCAGC CATCTTCCTC CCAGAACCAG AACCAGAAAC AAAAGAAGAG AATACAGCTT ACTATCGAAC CAGAAACAGT CAACCAGCCT CTTGAAGACG AAGACTTGAT TCCTGGAAAT GCCTTACAAT GTTCTGTCAA GTCTGTGGAA GATCACGGGA TTATCATGAA TACCGGCAGA GACGGCTTGT CAGGTTTCAT CTCCAACAAG GAAATCAAGA ACACCCCAGA CTTGGACGTT GAAATATTGA AACCTGGAAA AGTCTTGCTT ACTAGTATTG TATCCAAGTC AGCTTCTAGA ACCGTCAATT TGAGACCGAT TCACTCGACT TCAGTATCGA AAAAGTCGGC TGTAACATCC ATTTCTTCTG TAGATGCCGT TTTACCAGGT ATTTTAGTGG ATGCACTTGT AGCTGATGTC ACAAAGAATG GTTTGATAGT CAAGGTATTT GGATTGGTAG ATGCTACCAT TAACTTGGCC CAACTACAGG AATTTGACTT CAATGCTTTG AAACACAAGT ATGCCATTGG TAACAACATA AAGGCTAGAG TCATGGCTGT TCTCACCCGA GCCGGATCTA AGAAGTTGAT CTTATCGCAT TTACCCCACG CCATTTCCTA CACCAGTACT GCCAGCAACC CAGATGCTTT AGAAGCTTTC CCAATTGGTC ATGTGTTGGA AGATGCTGAA GTTGTGGGCT CTGATCCAAA TTATGTCTTC CTCAAGTTTG GAGGTTCTAT TCTTGGTCAA GTGCACAACT CCAAGATTGA CAAGGATAAG ACACTTGAGC ACGACTTTAA TCTTGGCTCA AAGCACAGTG CCAGAGTGAT TGGCTTCAAT AGCATAGACA ACTTATTGGT GTTGACTATG GAATCCCATG TCATAAACTC TCAATACTTA CATGCTTCTG ATGTTCCTAA CGGAACCGCC GTCAAATCAT GTGAGATCAT CAAAGTTTTA CCTGAAGCTG GTGGAATTGT CATTAAAGTT CTCGACGAGT TCGAAGGATT TGTACCAGGC AGCCACATGT CTGACATCAA ATTGGTATAC CCTGAAAGAA AGTTCAAGGT AGGCAGTAAG GTCAGAGGCA GAGTGTTGAG CAAACAAGGT AACAAGTTAG TAGTGACATT TAAGAAGTCG TTAGTTAACA TTGAAGACGA TGAAGTTTTG GCCAGATTCG AAGATGCAAA AATTGGCTTC AAGACCCCAG CCATTGTTGA AAAATTTGTT CACAATGGTG CCATTGTGTC TTTCTTTGGT AACTTGAGAG CTTTCTTGCC CAAAAACGAA ATCTCAGAGA CATTTGTAAG CAACGCTAGT GATTACTTGA GGTTGGGACA AACTGTCAAC GTCAGAGTGT TAGACGTCAA ACAGGAAGAA AAGAGAATGC TAGTCACCTT GAGGCATTCG TCGGAATTGA CCAACACCCA AAAATCATCC ATTGATGACT TGCAACCAGG GAAATCTATT GTAACCGTAT CTGTTGTAGA AAAGACCAAG GACTCGGTTA TTGTTGAGTT GGAAGGCAAC AGCTTGCGTG GTGTCATATA TACGGGCCAT TTGACTGATG GCAACTACGA ACAAAACAGA GCCTACGCTA AGAAATTATC CATTGGCGAA AAGCTTGAAG TTCTTGTGCT CGAAAAGGAT TTAAAGGCTA GAACGGTTAT TGTTTCAGCC AAGAAATCCT TGATCGACGC TGCTAAGCAA GACGCCATCC CAGCTTACTT CAAGGATATC AAGGTGGACA ACAAGATGTT GCGTGGTTTC GTCAAGTCTG TCACCAACAA GGGGTTGTTC GTATCCTTTG CTGGTAAGTT GACTGGTTTG GTGTTGGCTA AATATGCAAC CAGCAACGAA AACGAGGACT TATTGAAGAA GTTCTACAAG TACCAATCGA TTGCTTGTCG TGTTATCAAC ATTGATGAGG AAAACAAAAG ATTCTTGTTG ACTTTGAAGG ATGTCAACGG CTCCAAGAAC ATCGACTCTG AGGCCGTAGT GAACCCAGTA GACACTAGCA AGAAGTTGAT TGGTGACTTT GTTCCTGGTA TCGCTACGAA GGCTGTCATC AAGTCGGTCA AAGGTACTCA ATTGAACGTT CAGTTAGCTG ATAACTTACA GGGCAGAATT GCAGCTACTG AGTGTTTCAA CTCCTGGAAT GAAATCAAGG ATAAGAAGCA GCCATTGTCT CAGTTCCACA AGGGTCAAGT TATTGATGTT AAGATTATCG GTTTCCACGA TGCTAAGAAC CACAAATTCT TACCCATAAC CCATACCAGA TCTAATAAGA ACATCATCCT TGAGCTTTCT CTCATCAAGA AGGATCTCGA ATCTTCCACT CCATACCAGG AGTTGACCTT TTCTAGCATC GTCCCCGGTT CCCAGCACAT TGTATTTGTC AACAACATTG CCAAGGGCTA TGTCTGGGCA TCATTATCTC CAAACATCAG AGGACGTATT TCTTTCATGG AATTGACAGA CAATGTTTCA GTGTTCGATG ATCTTGAAAA CAACTTGCCT ATTGGTTCTG CCATCAGTGC AACTGTTAAG GAAGTTGACA ATGAGCACCA CTCGGTTGTG TTGACAGCCA GAAAGAACAT GGTGGCTTCT ATCAAGGATG TCAAAGTTGG TCAAAAGTAC CCTGCCAGAA TTTTGAAAGT CAGAGACACC TATGTTCTTG TCGAATTGGG CGAGAAGGTT GTAGCCTCTG CATTCATTAC TGATGCATTG GACAACTATT CTGACAAATT GGAATCTGTC TTTACCACGA ACGAGTTTGC TACTGCTACC GTCTTAGACA TCGACACCGA TTCAGAGAAG ATAGCTGTCT CCTTACGTAC CGACAGCCCT ACTGACAAGG TGATCAACTC CATTGCTGAC TTGAACCGTG GCGATGTCGT CAAGGGATTT GTCAAGAATG TAGCCAACAA CGGTGTATAT GTTTCATTGG GCAGATCTGT TCATGCTTTG GTCAGAGTTG CTGACTTGTC TGACGCCTAC TTGAAGGACT GGAAGAAGTA CTTCAAGCCA CATCAGCCTA TTTTGGGTAA GATCTCAGCC TGTAAAGAAG AAGGCAGAGT ATTGATGACT TTGAAGGAAA GTGAGGTCAG CGGTGAGTTA AACGTCTTGA AGAGATTCGA CGATTTGGTC GTTGGTGAAA TCTTTGAGGG TTCTGTCAAG CGTGCTACTG ATTTTGGTGT ATTTATCAAG TTGGATGGTA CTCTCAACAT CACTGGTTTG TGCCACCACT CTCAAATTGC TGACAAGGAT GTAGATAATG TTACTTCCTT GTTTGGTGAA GGTGACAGAG TCAAGGTCAA ACTCTTAGCT ATTGACAGCG ACAAGAAGCA GTTGTCGTTG GGTATGAAAG CTTCATACTT TACTACTGGT GAAGAAACTG AAGGAGAAAC CGACGACATA GAAATGAAGG AAAGCGATGA CGAGTCTGAA GTTGAAGAAT CCGAAGAGGA AGAAGCCGAA AACGACGAAG ATGACGACGA CGACGAAGTC ATGGAAGCTT TTGCCGAAGA AGCAGACAGC GAGGAAGACG AAGAAGAAGA CGTCGAAGAA AAATCGACTG GTTCTTTATC TGGGTTGGCC ACTAATGGAT TTGATTGGAC TGCTTCCATC TTAGACCAAG CTGAAGATGA TGACGAGTCT TCTGACGAAG AGGATTTCAC CCAGGACAAG AAGTCCAAAA AGAAAAAGCA GAATATCGTT GAAGACAAGA CTGCTGACTT GAACACGCGT GCTCCACAGT CCGTGGCCGA TTTCGAGCGT CTTCTTGTAG GAAATCCAAA CTCTTCTATT TTGTGGATGA ACTACATGTC TTTCCAATTA CAATTGAGTG AAGCCGACAA GGCTCGCGAG ATCGGGGAAA GAGCCTTGAA GACCATAAAC TACCGTGACG AGCAAGAGAA ATTAAACATT TGGATTGCCT TGCTCAACTT GGAAAACACT TTCGGTACTG ATGAATCCTT GGAAGAGATT TTCAAGCGTT CGACCCAGTA CATGGACTCA TTGACCATGC ACCAGAAGTT GGTCAGTATC TACAGCATGT CGGAGAAATA CTACCAGGCT GAAGAGTTGT ATAAGGTGAT GACTAAGAAG TTTGGCAAGT CTATATCCGT ATGGGTTCAA TATGGTTCCT TCTTGTTGGA CCGTAAGTTA CAGGAAGAAA CACATGAGGT ATTGGCCAAG GCATTGCAGA CTTTACCCAA GAGAGATCAT ATTGAAGTTG TGAGAAAGTT CGCACAACTC GAGTTCAGCA AAGGGGATGC TGAACAGGGT AGATCCTTGT TTGAAGGTTT GGTTGCCGAT GCTCCTAAGA GAATCGACTT GTGGAACGTT TACGTGGACC AAGAAATCAA ACAAGACAAC AAGAGCAAGG TTGAAGACAT CTTTGAGAGA GCTTTGGCTA AGAAGTTGTC AAGAAAACAG GCCAAGTTCT TCTTCACCAA ATGGCTTGCT TTTGAAGAAG AAAAGGGAGA TGAACAGATG GCTGCTAGAA TCAAAGCCAG AGCCGTTGAG TACGCCCAAT CTCACAAGTA GCATTACACT GCAAACAAAC ATGAAAACCT CACAAGCATT TTTATTTTTA TCATTACAAC TGTCTATAGA ACCTATTGTA TATTGCATTT ATTTACTTCA TTCATTTAAT ATAGAGAATA GTTT
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Protein sequence | MSETYGSKSV LSSSEVSFPR GGATALTPLE VKEISNEATK DVLFEAANSA KRTASSKTDR PAKKARRAPK KKSQEDADEA EEDSKVQIEN ITFKSLIPGT LVLGQITAVG KLDITLALGD NLVGYIPITS ISEELTIQIE QYEKAEDSDE ESEDEEDEQE SEDGKIRTAT LKSKSRPEFP ELKTLFSIGQ WLRAKVVQPS SSQNQNQKQK KRIQLTIEPE TVNQPLEDED LIPGNALQCS VKSVEDHGII MNTGRDGLSG FISNKEIKNT PDLDVEILKP GKVLLTSIVS KSASRTVNLR PIHSTSVSKK SAVTSISSVD AVLPGILVDA LVADVTKNGL IVKVFGLVDA TINLAQLQEF DFNALKHKYA IGNNIKARVM AVLTRAGSKK LILSHLPHAI SYTSTASNPD ALEAFPIGHV LEDAEVVGSD PNYVFLKFGG SILGQVHNSK IDKDKTLEHD FNLGSKHSAR VIGFNSIDNL LVLTMESHVI NSQYLHASDV PNGTAVKSCE IIKVLPEAGG IVIKVLDEFE GFVPGSHMSD IKLVYPERKF KVGSKVRGRV LSKQGNKLVV TFKKSLVNIE DDEVLARFED AKIGFKTPAI VEKFVHNGAI VSFFGNLRAF LPKNEISETF VSNASDYLRL GQTVNVRVLD VKQEEKRMLV TLRHSSELTN TQKSSIDDLQ PGKSIVTVSV VEKTKDSVIV ELEGNSLRGV IYTGHLTDGN YEQNRAYAKK LSIGEKLEVL VLEKDLKART VIVSAKKSLI DAAKQDAIPA YFKDIKVDNK MLRGFVKSVT NKGLFVSFAG KLTGLVLAKY ATSNENEDLL KKFYKYQSIA CRVINIDEEN KRFLLTLKDV NGSKNIDSEA VVNPVDTSKK LIGDFVPGIA TKAVIKSVKG TQLNVQLADN LQGRIAATEC FNSWNEIKDK KQPLSQFHKG QVIDVKIIGF HDAKNHKFLP ITHTRSNKNI ILELSLIKKD LESSTPYQEL TFSSIVPGSQ HIVFVNNIAK GYVWASLSPN IRGRISFMEL TDNVSVFDDL ENNLPIGSAI SATVKEVDNE HHSVVLTARK NMVASIKDVK VGQKYPARIL KVRDTYVLVE LGEKVVASAF ITDALDNYSD KLESVFTTNE FATATVLDID TDSEKIAVSL RTDSPTDKVI NSIADLNRGD VVKGFVKNVA NNGVYVSLGR SVHALVRVAD LSDAYLKDWK KYFKPHQPIL GKISACKEEG RVLMTLKESE VSGELNVLKR FDDLVVGEIF EGSVKRATDF GVFIKLDGTL NITGLCHHSQ IADKDVDNVT SLFGEGDRVK VKLLAIDSDK KQLSLGMKAS YFTTGEETEG ETDDIEMKES DDESEVEESE EEEAENDEDD DDDEEDEEED VEEKSTGSLS GLATNGFDWT ASILDQAEDD DESSDEEDFT QDKKSKKKKQ NIVEDKTADL NTRAPQSVAD FERLLVGNPN SSILWMNYMS FQLQLSEADK AREIGERALK TINYRDEQEK LNIWIALLNL ENTFGTDESL EEIFKRSTQY MDSLTMHQKL VSIYSMSEKY YQAEELYKVM TKKFGKSISV WVQYGSFLLD RKLQEETHEV LAKALQTLPK RDHIEVVRKF AQLEFSKGDA EQGRSLFEGL VADAPKRIDL WNVYVDQEIK QDNKSKVEDI FERALAKKLS RKQAKFFFTK WLAFEEEKGD EQMAARIKAR AVEYAQSHK
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