Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PICST_58577 |
Symbol | |
ID | 4838744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Scheffersomyces stipitis CBS 6054 |
Kingdom | Eukaryota |
Replicon accession | NC_009044 |
Strand | - |
Start bp | 691472 |
End bp | 692548 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 12 |
GC content | 39% |
IMG OID | 640390059 |
Product | predicted protein |
Protein accession | XP_001384428 |
Protein GI | 150865279 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5325] t-SNARE complex subunit, syntaxin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0646976 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.944639 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCGAG ACCGTACCAA TCTCTTTCTC TCATATAGGC GGACGATTCC GCGGGCCATC CGGACAACCA ATGAGTCACG TTTTGATTCT CTCATAGAAG AAGAGGAAGG CTTGATAAAC CAACAGAGTA GAAGGAAAAC CAACAAGTAC CGTGATACTG ATGATGGAAT TGAAATGAAA CCGGTGATTC CTTCCCTTTT TGACATCGCC CAAGAGTTGG ACTCCCATTT AGTCACGATT AAACGAGAGA CCAATGAGTT GCTGGCTCTC TACAAGAGAC TTATCATAGT GAATAAATCT GACAAGAAGT CATTAGAGTC TCGAATTGAA AACTTGAACT ACGACATCTT GAAAACATTT GAAAAGTGCT ATATACTCGT GAAAAAATTT GAGTATTTGA ATGTGAATCA TGACCGTTTA GGCTTGAATT ACACAGAAAA CGACTTGGAA ATCTTGAACA ACTTTAAGAA AACATATGCT ACGAAGATTC AAGACAGTTC GCTCATTTTC CGGAACCTTC AGAATAACTA CATCAAGTTC TTGCGAGACG ATGAAGATGA AATGGATTCG CTCATTACTT CTAGAACGAG TATGGACACA AACACATTAC TAGATGAAGA AATCGACAGA TCTCAACAAA TCGAAAACTA TCTGAAACAG GTTCTTCAAC AAACACAACG AAATCTGAAT CAGAGTTATT TACATCAACG AGAACAAGAA ATTTCGAAGT TGGCCATGGG AATTCTTGAG ATTCTGACTA TCTTCAAAGA GATGGAGAGT CTTGTCGTAG ATCAGGGAAG TTTGTTAGAC AGAATAGATT ACAACCTACA GAACACAGTA CATGACTTGA AACAGTCAGA CAAGGAGTTG ATTAAAGCCA AACATTACCA GAAGAGAACA ACCAAGTGTA AAATCATCTT CTTGATGAGT CTCATCGTGT TCGTTCTTTT TATCATCGTG TTGGTGAAGC CTCATGGAAG CACTACTGTT GTAGAGAAAC CAAAACACCC CCCACAGCAA AGTATACCAG ATCGACCTAC CATAGATAAA CCTGTCGAAG GCAGTAATGT GATATAG
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Protein sequence | MFRDRTNLFL SYRRTIPRAI RTTNESRFDS LIEEEEGLIN QQSRRKTNKY RDTDDGIEMK PVIPSLFDIA QELDSHLVTI KRETNELSAL YKRLIIVNKS DKKSLESRIE NLNYDILKTF EKCYILVKKF EYLNVNHDRL GLNYTENDLE ILNNFKKTYA TKIQDSSLIF RNLQNNYIKF LRDDEDEMDS LITSRTSMDT NTLLDEEIDR SQQIENYSKQ VLQQTQRNSN QSYLHQREQE ISKLAMGILE ISTIFKEMES LVVDQGSLLD RIDYNLQNTV HDLKQSDKEL IKAKHYQKRT TKCKIIFLMS LIVFVLFIIV LVKPHGSTTV VEKPKHPPQQ SIPDRPTIDK PVEGSNVI
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