Gene PICST_53869 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPICST_53869 
Symbol 
ID4851717 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameScheffersomyces stipitis CBS 6054 
KingdomEukaryota 
Replicon accessionNC_009068 
Strand
Start bp2640984 
End bp2642042 
Gene Length1059 bp 
Protein Length352 aa 
Translation table 
GC content45% 
IMG OID640393425 
Productpredicted protein 
Protein accessionXP_001386838 
Protein GI126275378 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.157249 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTCGT TTGCGAAAAA AGTACGAACG TTCGATGCGT TTCCTAAGGT GGATTCTCAA 
CACACGGTGA GGTCACAGCG AGGAGGGTTT TCTACCTTGA TGACAGCATT CTGTGGCCTT
TTGATAGTGT GGGTAGAGAT AGGTGGCTTT CTTGGTGGAT ATGTCGATCA TCAATTCATA
GTTGATAACG AGATCAAGTC CTCTCTTGTC ATCAATGTGG ACATGCTCGT AGCCATGCCT
TGCGAGTTTC TCCATACAAA CGTAGAAGAC ATTACGAAAG ACCGGTATTT GGCTGGAGAG
ACACTCAACT TCCAGGGAAC CAACTTTATA ACACCACCCA CGTTCAACAT CAACAATATC
AACGACAAAC ACGATACCCC GGACTTGGAC GAGATTATGC AAGATTCACT CAGAGCCGAA
TTCAGCGTAT CTGGAGCTCG CATTAACGAA GGAGCTCCAG CTTGCCACAT CTTCGGTTCG
ATTCCGGTTT CGCATGTAAA GGGTGATTTC CATATCACAG CCAAAGGCTT GGGCTACAGC
GACAGACTGC ACGTCCCTCT TGAAGCCTTG AACTTCAGTC ATGTAATCCA GGAGTTCTCC
TTTGGCGACT TTTATCCATT CATCAACAAT CCCTTAGATG CCTCAGGAAA ATTGACGGAA
GAGCCTTTGA TTTCGTACCT GTATTTCGCA AAAGTCGTGC CCACCTTGTA CCAGCGTTTG
GGATTGGTTG TAGATACGAA CCAATACTCG TTGACAGAGA ATAACCATGT CTTCAAGTTG
GAGCACAAGC GCCCTACGGG AATTCCTGGA ATCTTCTTCA AGTACGATTT TGAGCCAATT
AAGTTGATCA TCATTGAGAG AAGATTGCCA TTTATCCAGT TTGTAGCCCG TTTAGCCACA
ATTGTAGGCG GTTTACTTAT TCTCGGAGGC TACCTCTTCC GTATGTACGA GAAGATCTTG
GTAGTACTCT TAGGAAAAAA ATATGTTGAC AAAGACAGAG AAAAGAAATC CGGGGGAATT
CTTGACAACG ACGTCAAACA GAAAATCAAC TCCGACTAA
 
Protein sequence
MDSFAKKVRT FDAFPKVDSQ HTVRSQRGGF STLMTAFCGL LIVWVEIGGF LGGYVDHQFI 
VDNEIKSSLV INVDMLVAMP CEFLHTNVED ITKDRYLAGE TLNFQGTNFI TPPTFNINNI
NDKHDTPDLD EIMQDSLRAE FSVSGARINE GAPACHIFGS IPVSHVKGDF HITAKGLGYS
DRLHVPLEAL NFSHVIQEFS FGDFYPFINN PLDASGKLTE EPLISYLYFA KVVPTLYQRL
GLVVDTNQYS LTENNHVFKL EHKRPTGIPG IFFKYDFEPI KLIIIERRLP FIQFVARLAT
IVGGLLILGG YLFRMYEKIL VVLLGKKYVD KDREKKSGGI LDNDVKQKIN SD