| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_32361 |
|---|
| Symbol | |
|---|
| ID | 4839541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009045 |
|---|
| Strand | + |
|---|
| Start bp | 1313079 |
|---|
| End bp | 1314776 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640390856 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001384943 |
|---|
| Protein GI | 150865635 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG5207] Isopeptidase T |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.136395 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTACAT CCAGAAAAAC CGTTCCTGGA GGAAAGTCCG TGCCGAATGC CGCTGGAACC
TCGAATGGAA GTGTTTCTTC CAACGGCCAT GGTAAAAATG GTACTTCTGA ATTAGACTAT
GAAAGGGAAT CCCAGCATAG GTTGCGACCA CAAGACAACT ACTCCACCAT CGCAGCCTGC
TCCCACCTCA AGTCCGTGTT AGAATCATCA GCCCGAGAGA CGGCCCTCAT CACATACAGA
CAAGCTGTCA ACATCTCTCG GCCAATCGAT AATGACCTTA TCTACACCGC GAAGAAGGAT
GGCTCTGTAG TGTCGCACCA TCGTTTGTTA GTACGAAAAT CCTCATCCTT GCGGTGCACA
GACTGTTCGC TCAACAACTT CCACCACAAT TTTACCTGTT TGCAGTGCCC GCATGTGGGC
TGTTTCAATG ACGTCCACAA CCATGCTTAC ACCCACTATA AGCTCACCCA ACATGTCTTC
GCTATCGACA GCCACTCGGG CTTGCTTTAC TGTTTTCCGT GCGGAACCTA TGTCAACCAT
CCTGCTCTAG ATAAAGTCAG ACAGGAGGTG TTGTTGAGTG CTACAGACTA CAGCGATCTA
ATTAAAAGCG AGGTAGATGA AGAATTTGAT TATAGTGATG TAGATGCTCA CTACTCAGAC
CCCAGCCGCT TGGGCGTAGA CGGGTTGAAG GGCTTTGTCA ACTTGGGTGC CACTTGTTTC
ATGAGTTCCA TCCTCCAGAC CTTCATCCAC AACCCCATCA TCAAAAACCA TTTTTTTAAC
AACGACTTGC ATTACTTCAA CTGCGAAAAG AGCATGGCAC AGGGTTCGAC TCTCGACGAA
AATAACGCAT GCATAACATG TAGCATCGAT AACATATTTC AGCTCTTCTA CACCTCTAAC
AGCATTGAAG GCTTTGGAAT GACGAACCTC TTGACCACAG CGTGGTACAA GAAAAAGTCG
TTGGCCGGAT TCCAAGAACA AGATGCCCAC GAGTTCTGGC AGTTTATCTT GAACGAGTTC
CACTCAGACT ACGAAAGGAT CAGATCCAAC ACTGGTTTAA GTCCAATGTC AACTTCAGAC
TGCAATTGCA TTACACACTC TACATTCTCA GGAGAACTAC AAAGCTCTAT AAGATGCCTC
TCGTGCGAAT CTGTGACCAA GACTATCGAC CCGATGGTAG ACTTGTCGCT CGAAATCAAT
CACTTGAAGC TGAACCATCC TGGAAGCCAG ATAGATTTGT ACGACTGCCT CGACCTCTTC
ACCAGCGATG AGAAGTTAGA TGTTATGTAC ACCTGTCAAT CGTGTGGTGA CAAGACCAAG
GCTATCAAGT CGTTGAGTGT CAAGTCGCTT CCGCCTGTTC TATCCATCCA GTTGAAGCGA
TTCAAGCATA ATTCGTTGAA CGACACTTCG TCCAAAATCG AAACTCCTAT AAAGATTCCT
CTCTATTTAA ACATGACTAG GTATTCTATA GGTCATGATC CCCACGATTC AGAGCAAATT
GATGAAGACA AAATCTTCGA GCTCTTCGCC TTGGTGTGCC ACATCGGCTC GGTGAATACG
GGCCACTACA TAGTACTCAC CAAAGATGGC AATGGCCAGT GGTTCAAATT CGATGACAGC
GTTGTCTCGA TGGTTTCGCA AGAGGAGGTA ACCAATACAA ACGCATACTT GGTGTTCTAC
ATCACCCACA AGATCTAG
|
|---|
| Protein sequence | MSTSRKTVPG GKSVPNAAGT SNGSVSSNGH GKNGTSELDY ERESQHRLRP QDNYSTIAAC
SHLKSVLESS ARETALITYR QAVNISRPID NDLIYTAKKD GSVVSHHRLL VRKSSSLRCT
DCSLNNFHHN FTCLQCPHVG CFNDVHNHAY THYKLTQHVF AIDSHSGLLY CFPCGTYVNH
PALDKVRQEV LLSATDYSDL IKSEVDEEFD YSDVDAHYSD PSRLGVDGLK GFVNLGATCF
MSSILQTFIH NPIIKNHFFN NDLHYFNCEK SMAQGSTLDE NNACITCSID NIFQLFYTSN
SIEGFGMTNL LTTAWYKKKS LAGFQEQDAH EFWQFILNEF HSDYERIRSN TGLSPMSTSD
CNCITHSTFS GELQSSIRCL SCESVTKTID PMVDLSLEIN HLKSNHPGSQ IDLYDCLDLF
TSDEKLDVMY TCQSCGDKTK AIKSLSVKSL PPVLSIQLKR FKHNSLNDTS SKIETPIKIP
LYLNMTRYSI GHDPHDSEQI DEDKIFELFA LVCHIGSVNT GHYIVLTKDG NGQWFKFDDS
VVSMVSQEEV TNTNAYLVFY ITHKI
|
|---|
| |