| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PICST_29419 |
|---|
| Symbol | |
|---|
| ID | 4836957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Scheffersomyces stipitis CBS 6054 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_009042 |
|---|
| Strand | - |
|---|
| Start bp | 212707 |
|---|
| End bp | 213969 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 12 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640388272 |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_001382805 |
|---|
| Protein GI | 126132560 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2175] Probable taurine catabolism dioxygenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.106431 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATACA AAGTTGCTGG TTCAGAATGG GTTGACCCTT TGGTAGCCAA AGCCATCAAA
CAAAGTACAT TGGGCGGTTT CATTTCTCCT GACAAAATCG TAGAAGAGAG AAAGAAAATC
AAGTTCCCAG AGTTCTTTGG TCCTTTCAAC CCAGAAGAGG CTGGAAAGTA TGAATTTCTT
AAGAATCCTG ATGGAGCTAA GAATGACAAG GGTCACTTGG GAGATCCAAC ATTCAAAAAC
TTATTCAAGC CAGGGTCCAA GGTGAAGACC ATTGACTTGT CACCAAACTA CGGTACTGAA
ATTGACGGTA TTCAATTGAG TGAATTGGAT GAAGCCGGAA AGAACGACTT GGCTTTATAC
TTAGAAACAA GAGGTTTGGC TGTCTTCAGA AATCAGGATT TTAGGGAGAA AGGTCCAGCT
TTTGCAAAGA AATTTGGTCA ACATTTTGGT CCATTACATA TCCACCCATC GGTAAGCTAT
TCAGCAGAAG AATCCCCAGA GTTGTTGGTT ACATACAGAC CAGCGGGAGG TCCAGAAAGG
TACAATGCAC AATTTGCAGG TACTACTACA ACTACTGGGT GGCATTCGGA CGTCAGTTTT
GAAGAATACC CAGCTTCTTT CAGTTTTTTC GTTGCTTTGG AAGCACCAGA AACTGGCGGA
GATACTGTAT TCCTTGACTT GAGAGAAGCC TATAGGAGAT TGTCTCCCCC AATTCAAAAG
TTCTTTGAAT CTTTGACAAT CATTCACACC AACTATTACC TAAACCAACT TGCTAAATTG
AAGGACTTGG ATACGCGTGT CAATGCTGAT TCTTTTGCTG AACATCCATT GGTCAGAACT
CATCCTGTTA CAGGTGAGAA GTCGTTGTTC TACTCTAAAG GATTTGCCCT CAGAGTAAAG
GGACTCAAGC AGCAAGAGTC AGATGCCATT CTTAGTTTCT TGGAAGACCA TATTAACAAC
AACCCTGAAA TTCAAGTGAG AGCAAGTCAT AGAGGAACCA ATTCGGGAAC TATTATTGCC
TGGGATAATA GAATCTCTAT ACATACTGCT GTTGCTGATT TCTTACAACA CGAGACCGGA
CCTCGTCACC ATTTCAGAAT TACTGTTGTA GGCGAAAAGC CTTACTTCGA GGAAGCTGCC
GAAGAGAAAG TTGCAAATGG ACACATCAAA AGCTCATCTA ATGGACACTC TAACGGACAC
TCTAATGGAA ACTCTAACGG TCACACAATT GCTTCTAATG GCTCCAATGG TAGTGAGAAC
TAA
|
|---|
| Protein sequence | MTYKVAGSEW VDPLVAKAIK QSTLGGFISP DKIVEERKKI KFPEFFGPFN PEEAGKYEFL
KNPDGAKNDK GHLGDPTFKN LFKPGSKVKT IDLSPNYGTE IDGIQLSELD EAGKNDLALY
LETRGLAVFR NQDFREKGPA FAKKFGQHFG PLHIHPSVSY SAEESPELLV TYRPAGGPER
YNAQFAGTTT TTGWHSDVSF EEYPASFSFF VALEAPETGG DTVFLDLREA YRRLSPPIQK
FFESLTIIHT NYYLNQLAKL KDLDTRVNAD SFAEHPLVRT HPVTGEKSLF YSKGFALRVK
GLKQQESDAI LSFLEDHINN NPEIQVRASH RGTNSGTIIA WDNRISIHTA VADFLQHETG
PRHHFRITVV GEKPYFEEAA EEKVANGHIK SSSNGHSNGH SNGNSNGHTI ASNGSNGSEN
|
|---|
| |