Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_45887 |
Symbol | |
ID | 7200979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011676 |
Strand | - |
Start bp | 578430 |
End bp | 580171 |
Gene Length | 1742 bp |
Protein Length | 524 aa |
Translation table | |
GC content | 58% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002180264 |
Protein GI | 219118995 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGTTTT CTACCACGAA CGTTTACCAA AGTCTGCTGG TGGGAGTCGT ACTGTACGTC GGGGGCGTCG CCGGGTACGT GAGTCACCTC CCTACGAATT CGGGAGCGCT CCGCCTCGCC CCGTTCGTAC CGAGCCGTAG CAGTGTGAGC CGCATCCCCT ACCCATCCGT TCCATTGGAT ATCGCAACGC CTCTACGCCC CTCAACAAGT CTCTCCGCGG GGGCCTCACA GAGTTCTATC GTTCCGACGA AATCCATCGT TTCGGCGGCT GCCTTTTGCG TTCTCGACGT GGCCTTTCGT CGGGGATTTC TCAAGGCCAA CGTGGCGTTT CCCTCCAGTC TCGGTGGCTG CGGGATCCTA TTGGCGCTCT TACTGGCCTT GCCGCGCAAG ACCGCAGGCA AGGCCTTCTC GGCGCTCAAA CCCGGGGCTG ACGTGCTGGC CAAGTGGCTG CCCGTCTTTT TTGTACCCTC GCTCGTGACT CTGCCCTTGG CGGATTCTTT GGGGTCCTCG GCGGAGCTCG CCAAAGTTGC GGCCGTTATT GTGGGAGGAT TTTTGTTTAC TCTCGTGACC ACGTCGGCGT CGGTCGTTGC CGTTCGATCT CTCCTTTCTG GTGACACTAA CAGGGACGAA TCGCCCGAGG AGGCCCTTCC CAAAATAGAC GCTGTTTCCC AAGAAGCCAT TGCCGACGGC CGCGATCCCT TTCCTACAAT CAAGCCCTTT GACGATTCTA CCGCAACCAT GCTCTACGGT CTCACGGTCT TTAGTGGCCT GGCGGCGGCC AAACTCACGC TCGACGGAGC CTCGTACGCC ACCACCACGC CGCTCACGGC TCTCTTTATG CTGAGCTCGA CACTCGCCTC CTTTGTTTGG GGTGCCCGCT TGCCCAAAGC CTTGACCAAA GTCTTGCATC CTTTGGTCAC TTGCACCAGC CTCACTTGGG CGGCTGCTGC TGCCTTTGCC CGCGTTACGG GCCGTTCCTT TGCTTCCATG CTACAATCCT ACCGAACGGG AAGTCTCGGA AAAATGGCCG GCGCCGGTGA CTGGCTCCTA TTTCTGCTCG GTCCCGCCGT AGTCTCTCTC GCTGTTTCCA TGTACGATCG ACGCAAGCTT ATGCGGGAAA ACATCCCGGA AGTAGGGACT TCGATCGGCG TCTCAACCTT TGGTGGACTT TTTGGAACGG CGTGGGCCGT ACGCTTTCTT AGTATCGGCA ATCCCGCCGT TAGACTCAGT CTTTTGTCTC GTAATATCAC GTCCCCACTC GCCATGTCGA TTGCCAGTAT CCTTGGTGGT GCCGATGTGA GCTTGGCCGT TTCCATGGTC GTTATCACGG GTTTGATCGG GGCCAACTTT GGCGCCACGC TTTTGGACGC CTTGGGCATC CGCGACGCTG TGGCGCGTGG CCTAGGCATG GGCGCCGCCG CTCACGGTCT AGGCACGGCC GCCATTGTGA ACGAAAAGGA CGCCTTTCCC TTTGCCGCCA TTTCCATGGC GCTCACGGCT TCTGCCGCTA CCGTAGCCGT TTCCGTTCCC GCGATTCGCC GCGTGCTAGT CCAAACTGCC TTGGGCAGTT TGTGAAGGCC CGGAAAGCCC AGTCCAGCCC TCCCTAGTTT CAACTTTTCC AGAACACCAC ACAACCACAC GCATGCGACA CGGGTACGTC AACGTTGGCG ACTGAGTTTA GGATGAGCCA CTATCTATTC TAATACATGT ATATGCATAT TGTAACAAGA TGCATACACA CT
|
Protein sequence | MRFSTTNVYQ SLLVGVVLYV GGVAGYVSHL PTNSGALRLA PFVPSRSSVS RIPYPSVPLD IATPLRPSTS LSAGASQSSI VPTKSIVSAA AFCVLDVAFR RGFLKANVAF PSSLGGCGIL LALLLALPRK TAGKAFSALK PGADVLAKWL PVFFVPSLVT LPLADSLGSS AELAKVAAVI VGGFLFTLVT TSASVVAVRS LLSGDTNRDE SPEEALPKID AVSQEAIADG RDPFPTIKPF DDSTATMLYG LTVFSGLAAA KLTLDGASYA TTTPLTALFM LSSTLASFVW GARLPKALTK VLHPLVTCTS LTWAAAAAFA RVTGRSFASM LQSYRTGSLG KMAGAGDWLL FLLGPAVVSL AVSMYDRRKL MRENIPEVGT SIGVSTFGGL FGTAWAVRFL SIGNPAVRLS LLSRNITSPL AMSIASILGG ADVSLAVSMV VITGLIGANF GATLLDALGI RDAVARGLGM GAAAHGLGTA AIVNEKDAFP FAAISMALTA SAATVAVSVP AIRRVLVQTA LGSL
|
| |