Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_45116 |
Symbol | |
ID | 7200310 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011674 |
Strand | - |
Start bp | 240796 |
End bp | 246731 |
Gene Length | 5936 bp |
Protein Length | 1843 aa |
Translation table | |
GC content | 46% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002179389 |
Protein GI | 219117189 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.116099 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | CGCTCTTCCA TCGCTTCTTT CCACATGACC TCTAACTGTC GACAATTCCT TTTGCTGCTT TGGAAAAAGG ACCGCTCAAT TGTTATCGTC TGAATACATC TCACTCCTTT GTTTTTAATT TATCACGAAA AGAGTTTGTA AGGAAAGAAT ATGGGTCGCT CTAAGTCCAC TCCTTTACAA AAGGTTCCTA GTGAAGAGAA AGAAGTCTTC GGACGCAGGG AAGTTGGCGA CTCTACTTTC CGTGCTCTAT TCGCGGGTGA ACCCGTCGGG ACCGACAAAT CATGTATGCC TTCTCACGAT AAAACGACGC CACTTCGCAC AGTCCACGCA ACACCATCTC AAACGCAAAA CCCCAAAGCA AAGAAGAGAT CAAAGAAGCA AGTAAGTTTT AAGCCGGAAA ACCAAGGATT TATTTCTTCA ATCGAGGTTC CGGAAATATC TATTGAGGTT GTCGAGGATT CCCAATCCGG CAGAAATGTT TTCATCTTTT ATCGATTTCA GCAGGACGAT AGTAACCGTT CAGGAAATAG CTCTATATTC ACGAAAGCAC TAAAGCTTCC CGAGGCAACT GTACAAACGG ACAAAGACCT GGGGGTGGAC AAGCCACTCT GTTTGCCAGT ACGGACGTCT TTGGGCGCTT TTGACTTATG GAAGGCTTTT CAGCTTCCTT TACTTGGGAA AAGCCCAAAG ATCTTTCAAG AAATTCTGGA CAGTAATCTC ATAATTCTCT TCCTGAGACG TTCAGACACA AACAATTGGT GTCTGGATGT TTCACTCACG GAGAAAGCAC TGGATTGCTG TCGCCCTGAA GTGCTGCCTA TAAGACGGCC GGCAAACGCG AGGCGTTACA GCGCTGCCAA CAGCATCCAC TCAGTCCTTG CTGCTCTCTT TCCAGACACC ATTATTCATG ATACTTTACC CAACGTGGTG TCTACTATCG ATTTCTCTCC GATTTCTGCC CGACAAATAT ACGCATTGAC TGATAACAAG CAGCTCATCA CTCATTTAGA ACGGGAAAGC GTACCTGATG ACCTCGTCAT TCCAGATCTC AAACCTAAAT TACGTCCGTA TCAAGCTGAA GCTGTGAAAT GGATGTTAGA ACGTGAGCGG TCGAAAGCCG AAGGTGAGGA GTGGAAATTG GCTTGGGTAG GGTTGAGACC CTTCGGAGAT CCTTTACCAT TGAGTCAAGT CGCGGAAGAT GATCGACATG GCAATATCTT CTTCTCACCT TTTGTTGGGT GGATTACGAG AACTTATTCA GCTGCCAAAT CAATGATGGC GGACAACATG CCTCAACCGA GAGGTGGGAT TTTGGCTGAG TCGATGGGCT TAGGAAAAAC TGTAGAAGTA TTGTCTTGCA TCTTGGCCAA TCGAAGACCA ACAGTCGCAT CTTTACCTGT ACCTTTTGCG AGACGGAACC TTGATTCCGA ATTTAGTCGG TCACGTGACG TCGCTGAGTG TCATGACGAC TTATCTGAAC AGAATCGTTC TACTGAGGTC CGAGACGTTG AGTATCGGAA GGAACGCCGA AGTGAAACAT ATTTTAATAA AGGTGACACA GTGACGTCAA GAAATCCTCA TCTTGAATCA TTTGCAGGTA TCTCTTGTCT TTCAATTGCG GCAACGAACA CCCGTCTGGT AACACCGGAG CCAAAAAGAA ACGATCTCCC CGTGGCGACC GAACAGTGGC TTCAGGATGA TTACATTGGA TCATGCATAT GCGGAAAGCT TATTTCCCTT CCTGATCTAA AAAAAGAACT GATCATTATA TGTTGCTCCT GTAAAGAGCC TATGCATGAA TTTTGTGCAT CATTCGACTC GACAGATGCG TTGATGAAGG CAAGCACCCC ATATACATTT CGTCGTTCAC CCTCAGGTCC TGGCAGTCAC TGTAGACTTT CAATGGATGA AGCTTGCTGC CCTTGCTGTT TTTTAAGGAA TGGGCAAATG ACCATTAGTA GAGCTACCTT GATTGTTACC CCTTCCGCCA TCCTTCGTCA ATGGGAGCAA GAGATTCAAA AGCATACTGT TCAACTCGAA GGGCGGTCAA CGAAATGTAT TGTGTATAAT GGCGTGGAAG CAACGTGTAA GATGAAGCAC TGGAAGAAAG AGTGCTTTAG TGATGCCATA CAACTTATTC ACCCTGCACG ACTTGCTGAT GCTGACATTG TGCTCATAAC TTTCGACACA CTCATGTCAG ATCTAAACCA TTCGGATGAT AATCGCTTCC TTGCGGGGAT TCGAAGTGAA CAAGGCAACC TTAGAAGAAG AAAGAGATAC CGAGTTGTCC CATCTCCGTT GACGAAAATT CGCTGGTGGC GCATATGTCT TGATGAAGCT CAAAGAGTGG AGACACCTAC TGCAAAATCT GCCATCATGG CCTTGAAACT CGAAACCGAT CATCGCTGGT GTGTCTCCGG TACCCCCATC GGGCGGGGAA GAGTGGAAGA TCTATATGGA TTGCTCCTTT TTCTTCGCAT GCTGCCTTTT CAGGATATTG CGTTGTTTCT AAAATGCTTC TCGTTAGCAC ATAGAGGTAT TGAAGAAAGA ATTCAACAAC TCCTTTGCAA GGTATTTTGG AGGTCTACCT CCGAGCTTGA TTCAGTTCGA AGACAGATGG GGGTGCCTGA GCAAGTCGAG GAAAAGGTTT TGCTACGGTT CTCGTCGATC GAGAAACACT TTTATGAGAG GCAACTTGAG CAGACCATCA CCCTGGTTGG TGAAATCACA GAACGAGAGA GCGAGGGGAA AAGATCAAAT TCCAACCGAT TGACTACATT GGCTGATCGC CTTCATAAAC TACGTGCAGC ATGTTGCCAT CCACAAGTAG GTTCAAGTGG TATAGGGCGG GGTCATGCTT CTAGACTTTT GGGAAAACGC CGTGAAGGTT CCATGTCGAG CTTAAATTCG CGAGTTATGA CAATGGATCA GATTCTCGAA CGCTTTATCG AGGAGGCAAA GTTAAAGTGT GAGGAGTCAC AGCGTTTAGC CGTCATGCAC ACAAACGCCA TGGCAGCTCT ATCAACGCTG AAAATTGAAG CAAAAAAATT CTTTGGAGTA AATGTGGAAG AAGAGGATGA GATTTTAATG AAGAAAAGCT GTAAGTTGAC GATCTTTTGT TCTAGTCAAT CTCCTTTTTC TAAAATTTTA CATTTTGGTT GACAGGTGAC TTGTATCAGG AGTCTCTTAT GCAAACTGAA AAAAATGCTG CACCAACGCT TGTCATAGGG GAAGCGGTTG TAACTGGGAT GAAAGGCTTC CAGTCTCCAT ATTCTATTGT CGGGAATGGC AAATTGCGAC TGGAATGGAA ATTCTCCAAG AATGCAAACA CAAGCATTTG GGCCCAGATT GATTTTCAAT GTGCGAAAAA GTTAACCGAA ATTCGCCTCA GACCCCTGCG CGAGTCTTCC ACCCTAGATG TTTTGGTGGA TGGCCAACAA AGATCCCTGT GTCCCAGAGA CTGCACAATA CAGGTTCCTT ATCAAGGGGC TGGCGACGAA TGGATCGACG TTTCAAGAAT TTTTCTTTCG GAGTATGCGG GATTGAATGA TTGGAGCTTT GCAACGGGAT TTCACACTAA AAAATCGAAG ACTTGGCGAA TTTGCCTGTC CGGCTGCTTT CCACCGAGCG AGAAAGAGGT TCATGGACGA CAGGCCACCA GTTCCTTAGA ATCTGAGTTC TGTGTCGGAC TTGAATGCGA GCTGTTTGAA GCTACGATTG CACAGGATCC TTTACAACGA CTGCATTCCC TGAACAACGG GGCGTTATGT TTGGAAAGAT ATGCCGGGAT TTCACAAGAA GGTTCGGCTG TGATAGATCG TGAAGCTTTG ACGGAGCAAG TTTTGTGTTC ACGGGCGAAA AGAATGAAAG ACGAAGCATG CCAAATCGAA AGTCTCTATC TGGCCTCAGC AAGAGCGACC CATGACAGTT GTAAAAATCA TTTTCAGAAC ATTTCAAGCA AGAGATTGTA TCACGATGAA GCACTTGGGA AGTTATCACA ACAAGGAACG CATCTTTCCC AGAGTGGTGG AGATTGTTGG GACGAAAAGT GGTGGGACGA GTTTTTGGTT CTTTGCTGTC TGTACGGCAA TGAAGGTGAG CAGAGGCAAA TTGTCGAGAG GATTCTGCAA GATTTGGAAG GATACACCAG TCGGGGATTC AGCGCTGCTG TGGACACTCA AAACGGCTTT ATACCCTTTC CTGACTTCAA CGATATCGCT GGGCTTCGAA CTGCCATGGA CCTGCGAATA CAAGGAATTC GAGTAGGCCT TAAGGGCAAA CCGCCACGGA CGAGCAAAAG TGGTTCAAGG GGTTTCAAAA TGCGTGAAGC CACAAACAAC TTGGTTGTCC AGGAGACCAG GAAGTTAACG CAGTTTCGAT GTCAGCCTGG AATGCACTCA AAGACAATGG CTACTGTTCT TTCCCTAAGT CCTTTCCCTC AAAAGGATGA GATTGTTGAA AACAGTTGCT GCAGGGTGTG CAAAGCCGAC TGGAAGCAGA CCGGCCCGGA ATGTCGCCAC TGCAAGATTG GTGACGTCCT TGATGAGCTT GAAGTAGACA AGGTGACTTT GCTCGTTCTG AGGTCGGTGT ACGCACAGAT CAAATCGATG CTAGAGTCAA AGTTTCTCAG GGACGTTGGT ACGCACATAG AAGAAAGAGC CAAAGAATTT TTCAGCGTTC TCGAATGGCA GAAACGGGAA AAACTTGCTG CTTCTAGCTT ATGGAGGGTC CACTTGGACT TGCTCAACGA CTTGGACGAG TTAAATCAGT GCAAGAGGCC AATGAGACTG CTTCAGGCGG GCGAAGATCC AACCAAATTT TCGGATGATG AATTGAACGC GATCGTCTTT CCCGTGGATG CGTGCCCCAG GTATCATGAT AGTGCCGCAA AACAAGCCAT GGCTTTGGGT GATCTTCGAC GAGCGCATCA ATCGCTACGC TATTTAAAGA ACCAGTGGCA TAGCCGAAAG TATTCCGCGG AAGGTGATGA AGAAACCTGT GTTGTATGTT TAAGCGAATT GACGGGGGAG CGAGCGGTTC TTCGATGCGG ACATTCGTTT CACTATACTC CTTGCCTAGA AAAGCTTCGT ACAATTTCGG GAGAAATCAA ATGTCCACTA CGGTGTACCG TGCGCACAAG CAGAGAGGAT GTGATGGTTG CTGTCGAGAA GAGCAGTTCT AATGGAAGTG AAACTCGTCG AGTAGTGAAA GGAAGCTGGG GAACAAAAGT CACGAGACTT GTTGCTGATA TCATGGACGT GCAAGATAAA GGAGAAAAAT CCATTGTTTT CAGCCAATGG GAAGATATGA TTGATATTTG TCAGCAAGCT CTGGAAGACA ACGCTGTTGG GTACACACGT GCAAGAAGCC TAAAAGACCT TAGTGGTAGC GTCAGAGACT TGCAGTCTGT GGGTTGCGAT GTTCTACTTT TGAATGTCAA GAAGGCTGCT GAGGGTTTGA CTATTTTGGA GGCGTCCCAT GTTTTCCTAG TTGAACCTCT GTTGAATCAC AGTCTTGATA GCCAAGGTAC GTCCAACAAA ACGAAAGATT TTGGACTCCG ATTTTCCTAA CAAATATCGG TACCTCTGCA TGTGCGCAGC TTTAGCTAGA ATAAATAGAA TTGGACAGAC AAGGTGGGTA TGGTGATTAT TTTATTGCTC TGTGGCTGTT AAAAGAGAAA ACTGCTCACT CTTATTTTGC TGTCAAACAG GAAAACATAC GTTCACAGAT ACATCATGGA GGACACAATC GAAGTCAAAA TCGACAGCTT TAGATTAAAA AATGAAGGTA GCGTACTCCT GGCTAACAAC GACAGCAGAA AGCCCTCCAT TAGTGCCGGT GGGGCTGATG GGGGTTTCCA TTCACGAGAT GAGCTCATGA ACATTCTCAA TAGCTAGGAA GCTTTATTAA CTTAACATAG GCTAGGTAGG TTGTGT
|
Protein sequence | MGRSKSTPLQ KVPSEEKEVF GRREVGDSTF RALFAGEPVG TDKSCMPSHD KTTPLRTVHA TPSQTQNPKA KKRSKKQVSF KPENQGFISS IEVPEISIEV VEDSQSGRNV FIFYRFQQDD SNRSGNSSIF TKALKLPEAT VQTDKDLGVD KPLCLPVRTS LGAFDLWKAF QLPLLGKSPK IFQEILDSNL IILFLRRSDT NNWCLDVSLT EKALDCCRPE VLPIRRPANA RRYSAANSIH SVLAALFPDT IIHDTLPNVV STIDFSPISA RQIYALTDNK QLITHLERES VPDDLVIPDL KPKLRPYQAE AVKWMLERER SKAEGEEWKL AWVGLRPFGD PLPLSQVAED DRHGNIFFSP FVGWITRTYS AAKSMMADNM PQPRGGILAE SMGLGKTVEV LSCILANRRP TVASLPVPFA RRNLDSEFSR SRDVAECHDD LSEQNRSTEV RDVEYRKERR SETYFNKGDT VTSRNPHLES FAGISCLSIA ATNTRLVTPE PKRNDLPVAT EQWLQDDYIG SCICGKLISL PDLKKELIII CCSCKEPMHE FCASFDSTDA LMKASTPYTF RRSPSGPGSH CRLSMDEACC PCCFLRNGQM TISRATLIVT PSAILRQWEQ EIQKHTVQLE GRSTKCIVYN GVEATCKMKH WKKECFSDAI QLIHPARLAD ADIVLITFDT LMSDLNHSDD NRFLAGIRSE QGNLRRRKRY RVVPSPLTKI RWWRICLDEA QRVETPTAKS AIMALKLETD HRWCVSGTPI GRGRVEDLYG LLLFLRMLPF QDIALFLKCF SLAHRGIEER IQQLLCKVFW RSTSELDSVR RQMGVPEQVE EKVLLRFSSI EKHFYERQLE QTITLVGEIT ERESEGKRSN SNRLTTLADR LHKLRAACCH PQVGSSGIGR GHASRLLGKR REGSMSSLNS RVMTMDQILE RFIEEAKLKC EESQRLAVMH TNAMAALSTL KIEAKKFFGV NVEEEDEILM KKSCDLYQES LMQTEKNAAP TLVIGEAVVT GMKGFQSPYS IVGNGKLRLE WKFSKNANTS IWAQIDFQCA KKLTEIRLRP LRESSTLDVL VDGQQRSLCP RDCTIQVPYQ GAGDEWIDVS RIFLSEYAGL NDWSFATGFH TKKSKTWRIC LSGCFPPSEK EVHGRQATSS LESEFCVGLE CELFEATIAQ DPLQRLHSLN NGALCLERYA GISQEGSAVI DREALTEQVL CSRAKRMKDE ACQIESLYLA SARATHDSCK NHFQNISSKR LYHDEALGKL SQQGTHLSQS GGDCWDEKWW DEFLVLCCLY GNEGEQRQIV ERILQDLEGY TSRGFSAAVD TQNGFIPFPD FNDIAGLRTA MDLRIQGIRV GLKGKPPRTS KSGSRGFKMR EATNNLVVQE TRKLTQFRCQ PGMHSKTMAT VLSLSPFPQK DEIVENSCCR VCKADWKQTG PECRHCKIGD VLDELEVDKV TLLVLRSVYA QIKSMLESKF LRDVGTHIEE RAKEFFSVLE WQKREKLAAS SLWRVHLDLL NDLDELNQCK RPMRLLQAGE DPTKFSDDEL NAIVFPVDAC PRYHDSAAKQ AMALGDLRRA HQSLRYLKNQ WHSRKYSAEG DEETCVVCLS ELTGERAVLR CGHSFHYTPC LEKLRTISGE IKCPLRCTVR TSREDVMVAV EKSSSNGSET RRVVKGSWGT KVTRLVADIM DVQDKGEKSI VFSQWEDMID ICQQALEDNA VGYTRARSLK DLSGSVRDLQ SVGCDVLLLN VKKAAEGLTI LEASHVFLVE PLLNHSLDSQ ALARINRIGQ TRKTYVHRYI MEDTIEVKID SFRLKNEGSV LLANNDSRKP SISAGGADGG FHSRDELMNI LNS
|
| |