| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PG1097 |
|---|
| Symbol | |
|---|
| ID | 2553350 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Porphyromonas gingivalis W83 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002950 |
|---|
| Strand | + |
|---|
| Start bp | 1163097 |
|---|
| End bp | 1165568 |
|---|
| Gene Length | 2472 bp |
|---|
| Protein Length | 823 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637149795 |
|---|
| Product | putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase |
|---|
| Protein accession | NP_905309 |
|---|
| Protein GI | 34540830 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase
[COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase
[TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.430466 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCTTT TCTCCGAACT ATGCAGACGT TTATCCCCTG ATGCGGTAAG AATCGTTAGC
GATCACCGGA TCGTCCATTT GCTTACCGAT AGCCGTACGC TGTCCGAACC TGCTACTACT
CTCTTCTTCG CCTTACGCAC CACATCGGGC GATGGCCATT TGTATATTCG AGATCTATAT
GATAGAGGAG TAAGGAGTTT TGTCATTTCG GATCCCTCCA AAGATTTGAT GGAGAAAATG
CCGCAAGCGA ATTGGATGCG CGTGGCTCAT CCGTTGGACG CTCTACAACG GATAGCCGCA
CTAAGGCGTT CTATGTTCGA TATTCCTGTG ATAGGAATTA CCGGAAGCAA TGGCAAGACA
ATCGTCAAAG AGTTCCTTTA TCAGTTATTG CGCAAGGACT ATCGCATTGT CCGCTCGCCC
CGAAGCTATA ACTCGCAGAT AGGAGTACCC CTTTCCGTAT GGCAAATGGC GGAGGAACAC
ACTCTCGGTA TATTTGAGGC CGGCATATCG CAAATGGGGG AAATGGAACG TTTGGAGAGC
ATAATATGCC CCTCGTATGG TATCATTACG AATATAGGAG GTGCTCATCA GGAGAACTTC
CCGGATATAA AAACGAAACT GGAGGAAAAG CTCCGCTTGT TTCTCCATTG TCATACTATT
GTCTATAACG GCGACTGCGA AGAGATAGCT GCTGCTATCT CTTTCTGCGG TTTGGCAAGA
GCCGGAGTTT CATGGAGCCG GACGAAGCCC GAAGCTCATT TGTATGTGTG CAGATTGGAA
TCGAAAGATA ATCGCACCGA GATTGATTTT CGCTGTCTCG GCAAAGATTA TTCTCTTGTG
CTACCATTCA CAGATGCTGC TTCCATAGAA GATATCATCC ATTGCATCAC GCTGATTTCT
GTACTGTGTC CGGAGGTCTT ATCTGCTCGA AAGCGGTTTG CAGGTTTAGA GCCTGTAGAA
ATGCGAATGG AGGTTAAGGC CGGAGATCAT GGCAATACGA TCATCAATGA CGTTTACAGT
AATGATGTCT ATTCGCTCAC GCTGGCCTTG GACTTCCAAC GAAGACGTAC TGCCGAAACA
TGCCTAAAGA AAGTGTTGAT ACTGTCCGAC ATCTTGCAAA GCGGAATGCC TCCCGAAGAA
TTGTACAGGC ATGTGGCAGG ACAATTACAA GTCTATGCCC TTGACTTTTT CGTCGGCATC
GGAGAGGAAA TAGCCTCGCA TCGCACTTGT TTTGCCGGCA TGTCTGCCGT TTTTTTCAAA
GATGTTGCTA CATTCTTGAC ATCCGGTGAG ATAGAGCGCT TCTCCAACAG CTGTATTCTG
CTCAAAGGTG CACGCAAGTA TCGCTTCGAA CAGATTACGG AGCGACTTGT ACAACAGGTG
CACGAAACTG CGCTAAGGAT CAATCTGTCA GCTATCATCC ATAATCTTAA TTTCTATCGG
AATTTAGTTC CATCAGGCAC CAAAACCATC TGCATGGTCA AGGCTCAGGG ATATGGCGTA
GGCTCCTACG AACTTGTCAA AACCCTGCAG GAGCATCGTG TGGATTATAT AGCTGTAGCC
GTAGCGGACG AAGGCAAAGA ACTAAGAGAG CGAGGTATCG GTATGCCTAT CGTGGTCATG
AACCCCCAAA GGAATGCCTT TCAGACACTC ATAGACTACG GATTAGAGCC TGAGATTTAT
AGCTTTGCCC TTCTCGCTTC TTTTTCGGAA ACGGTCGTAC GCAACGGCCT TGTGGGCTAT
CCTGTTCATA TCAAAATCGA CACGGGAATG CATCGGCTTG GTTTTTTACC GTCTGATATG
ACACGACTCG GTGAGATTCT TGCCAAAGAT GCCGGACTGA GCATTCGCTC TGTATTTACC
CATCTTGCAG GTGCCGACGA TCCTGATTTG GATGATTTTA CGCGATCTCA ACTGCTGTCT
TTCGATGCTG CTTTCGCCTC TCTCTCCTCT TTATTAGGCT ATATACCTCT CCGTCATGTA
TTGAATACGG CAGGGGTAGA GCGTTTTGCC GACTACCATG CCGACATGAT TCGTCTTGGC
ATCGGCTTGT ATGGAGTAAC GGCATCCGGC GTACAAGGAT TGAGACCGGT AGCCACCCTG
ATGACTACAA TTTTGCAGAT CAAGGATATT TCTTCGAGCG ATACGGTCGG ATATGGACGT
AAAGGACGGG TACAACAACC ATCTCGAATA GCTATTATAC CTATCGGTTA TGCCGATGGC
TTGGATAGAC GTTTGAGTTG TGGAGTAGGA GAAGTACTTG TGCGTGGACA TCGCTGTCCT
ATAGTAGGGA ATGTCTGTAT GGATATCTGT ATGATAGATG TTACCGGTAT GCCGGCAGAA
GAGGGAGACC CTGTCGTTGT ATTCGGAGAA GAACTCCCGA TCGAAGAAGT TGCCCGTAAG
ATGAATACTA TCCCCTATGA GGTGCTCACG GGTATCTCGC CTCGTGTTCG CAGAGTTTAT
TTCCAAGAGT AG
|
|---|
| Protein sequence | MFLFSELCRR LSPDAVRIVS DHRIVHLLTD SRTLSEPATT LFFALRTTSG DGHLYIRDLY
DRGVRSFVIS DPSKDLMEKM PQANWMRVAH PLDALQRIAA LRRSMFDIPV IGITGSNGKT
IVKEFLYQLL RKDYRIVRSP RSYNSQIGVP LSVWQMAEEH TLGIFEAGIS QMGEMERLES
IICPSYGIIT NIGGAHQENF PDIKTKLEEK LRLFLHCHTI VYNGDCEEIA AAISFCGLAR
AGVSWSRTKP EAHLYVCRLE SKDNRTEIDF RCLGKDYSLV LPFTDAASIE DIIHCITLIS
VLCPEVLSAR KRFAGLEPVE MRMEVKAGDH GNTIINDVYS NDVYSLTLAL DFQRRRTAET
CLKKVLILSD ILQSGMPPEE LYRHVAGQLQ VYALDFFVGI GEEIASHRTC FAGMSAVFFK
DVATFLTSGE IERFSNSCIL LKGARKYRFE QITERLVQQV HETALRINLS AIIHNLNFYR
NLVPSGTKTI CMVKAQGYGV GSYELVKTLQ EHRVDYIAVA VADEGKELRE RGIGMPIVVM
NPQRNAFQTL IDYGLEPEIY SFALLASFSE TVVRNGLVGY PVHIKIDTGM HRLGFLPSDM
TRLGEILAKD AGLSIRSVFT HLAGADDPDL DDFTRSQLLS FDAAFASLSS LLGYIPLRHV
LNTAGVERFA DYHADMIRLG IGLYGVTASG VQGLRPVATL MTTILQIKDI SSSDTVGYGR
KGRVQQPSRI AIIPIGYADG LDRRLSCGVG EVLVRGHRCP IVGNVCMDIC MIDVTGMPAE
EGDPVVVFGE ELPIEEVARK MNTIPYEVLT GISPRVRRVY FQE
|
|---|
| |