Gene PC1_2005 details

Gene Information

• Locus tag: PC1_2005
• Symbol: trpD
• ID: 8132949
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 2301204
• End bp: 2302271
• Gene Length: 1068 bp
• Protein Length: 355 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644865295
• Product: anthranilate phosphoribosyltransferase
• Protein accession: YP_003017582
• Protein GI: 253688392
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0547] Anthranilate phosphoribosyltransferase
• TIGRFAM ID: [TIGR01245] anthranilate phosphoribosyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.615298
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAACTGT CTTCTACGAA ACCGTCTTCT AAGACCCGGG AACCGTCTAC TGCTCAGGAT 
ATCGTCACCA TGCAAAATAT ACTGGAAAAA TTATACCGTG CAGAAAGCAT CAGCCGTCAG 
GAAAGTCAGG CGCTGTTTGG TGCCATTATT CGTGGCGAAC TGGAAGCCAG CCAACTGGCA 
GCGGCGCTGA TTAGCATGAA GGTGCGCGGC GAGCATCCCG ATGAAATCGC CGGTGCTGCC 
ACCGCATTGC TGGCCGATGC ACAGCCGTTC CCTCGCCCTG ACTATTTATT TGCCGATATC 
GTCGGCACCG GCGGTGACGG TACGAACAGC ATCAACATTT CAACCGCCAG TGCCTTCGTG 
GCTGCCAGTT GCGGCCTGAA AATCGCCAAG CACGGCAACC GCAGCGTCTC CAGCCGTTCC 
GGTTCATCCG ATTTGCTTTC TGCTTTCGGT ATTAAGCTGG ACATGAGCGC GCAGGATTCA 
CGTCAGGCGC TGGACGATTT GGGCGTGTGT TTCCTGTTTG CCCCGCAATA TCATCTGGGT 
TTCCGCCATG CTATGCCAGT GCGCCAGCAG CTCAAAACCC GCACCGTCTT CAACGTGCTG 
GGGCCACTGG TTAACCCCGC TCGTCCGCCG CTGGCGCTGA TTGGCGTGTA TAGCCCTGAA 
TTGGTTCGGC CTATCGCCGA AACATTGAAG GTGCTGGGCT ACCAGCGTGC CGCCGTTGTG 
CATGGCGGCG GGATGGATGA AGTCGCCATT CATGCGCCGA CACAGGTGGC TGAATTAAAC 
AATGGCGAGA TAGAAACCTA CGAACTGACG CACCGCGATT TCGGACTGGA TACGTATTCG 
CTGTCGGCAT TACAAGGCGG TACGCCAGAA GAAAACCGTG ACATTCTCGC GTCACTGCTA 
CAAGGTAAAG GTGAACGCGC GCACGCTGCT GCGGTTGCCG CCAATGTTGC ACTGCTCCTG 
AGATTATTCG GACAAGAAAA TTTGCGCCAA AATGCGCAAC AGGCGCTTGA AGTCATTCAT 
AGTGGACAGG CTTATCAGCG CGTTATCGCA CTGTCCGCGA GAGGGTAA 

 

Protein sequence

MQLSSTKPSS KTREPSTAQD IVTMQNILEK LYRAESISRQ ESQALFGAII RGELEASQLA 
AALISMKVRG EHPDEIAGAA TALLADAQPF PRPDYLFADI VGTGGDGTNS INISTASAFV 
AASCGLKIAK HGNRSVSSRS GSSDLLSAFG IKLDMSAQDS RQALDDLGVC FLFAPQYHLG 
FRHAMPVRQQ LKTRTVFNVL GPLVNPARPP LALIGVYSPE LVRPIAETLK VLGYQRAAVV 
HGGGMDEVAI HAPTQVAELN NGEIETYELT HRDFGLDTYS LSALQGGTPE ENRDILASLL 
QGKGERAHAA AVAANVALLL RLFGQENLRQ NAQQALEVIH SGQAYQRVIA LSARG