Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1662 |
Symbol | |
ID | 8132604 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1915091 |
End bp | 1916602 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644864950 |
Product | ABC transporter related |
Protein accession | YP_003017239 |
Protein GI | 253688049 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0101569 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATCCCTA CCGCCCAAAG CCGATTGGAA ATGCAGAACA TTTCCATCTC CTTTTCTGGT TTCCACGCCC TCAAGCAGGT TAATTTCACA CTGGAAGGTG GTTCGATTCA TGCCCTGACC GGCGCAAACG GCGCGGGTAA ATCCACGCTC ATGACCATCT TATCCGGCGC TTACGATCAC TATCAGGGCG ACATTCTAAT TAATGGCAAG CAGGTCGATG TCCATTCACC GCGTGATGCC AAGCGGTACG GTATTCATCT GGTGCAGCAG GAAGTCGATG TCGCGCTGGT TCCCACGCTG TCCGTAGCGG AAAACATTAT GCTGGATACG CTGGCGCAGG ACGGGCATCT GCTGAGCTGG CCGCAGATAT ACCGTCAGGC GCAGGCACTT CTCGATCAAC TTGGCGTTCA CCTGAATGTT CGTCAGCGAC TGGATACCTG TTCGCTGGCC GAGAAACAGC AAATTCTGCT CGCCCGTGCC TTGTCCCACG AATGTCGTTT CCTGATTTTA GATGAACCCA CTGCCCCGCT GGATCAGGCC GAAAGCGCTC GCCTCTTTCA GGTAGTACGC CGTTTGCAGG CGGATGGCAT CGGAATCGTG TTTATTTCCC ACCGTATTCA TGAGCTGAGC GAAATCTGCG ATACGTTGAC CGTCCTGCGT GACGGCGAGT TTGTCAGCAG CGGCGCGATG CAGGGGCTCA GTGGCGAAGA GATCGTGGAG AGAATGCTGG GGCATCGGCT TGACGATATT TTCCCTCCGC GCCGAACCGC ACCTGCTGAA GAAACGCTGC TTCAGGTCAC CGGTTTGCAC GATGAAACAC TGCTGCACAA TATTTCCCTT ACGCTGCGCA AAGGGGAAAT TCTGGGCATT GCTGGGCTGG CAGGTGCGGG GAAAACCGAG CTATGTAAAG CGCTGTTCGG CGCGGAACCC TGCCAAATCG CGCAAGGTGA ATATCGCGGT AAGCCCTGGC GGCCGCACTC GCCACACCAG TCCGTCGAAC AAGGTTTGGC GCTGGTTCCT GAAGAGCGGC GTAAAGAAGG CATTTTTATT GATGAATCCG TCACCATGAA TCTCAGCATC ACCGCCACCG ACAGCTTTTC CCGCTGGGGC GTTTTCAGCC GCAGTAAGGC TGTTAGCTGG GCGAAACAGG TCGTTGAGCA GCTTGCGGTT CGCACCACCG GTCCGACGCA AAAGCTGGCA CGTCTGTCAG GCGGGAATCA GCAAAAAGTG GCTATCGGCA AATGGCTACG CAGCGAAGCA CAAGTTCTTA TTTTTGATGA GCCCACCAAA GGCGTAGATA TCAAGGCCAA GCAGGATCTG TTCACGTTGA TTGACGGCCT CGCTCGTCAG GGAAAAGGCA TTATTTATGC CTCGGGCGAA TTTTCCGAAC TTGTCGGACT CTGCGATCGC ATCTGCGTGC TATGGGATGG TCGCATTGTC GCCGAGCTGA ACGCCGCTGA GATTGACGAA GAAACCTTAC TTTTATATTC AACTGGAGGA ACTCCCGCGT GA
|
Protein sequence | MIPTAQSRLE MQNISISFSG FHALKQVNFT LEGGSIHALT GANGAGKSTL MTILSGAYDH YQGDILINGK QVDVHSPRDA KRYGIHLVQQ EVDVALVPTL SVAENIMLDT LAQDGHLLSW PQIYRQAQAL LDQLGVHLNV RQRLDTCSLA EKQQILLARA LSHECRFLIL DEPTAPLDQA ESARLFQVVR RLQADGIGIV FISHRIHELS EICDTLTVLR DGEFVSSGAM QGLSGEEIVE RMLGHRLDDI FPPRRTAPAE ETLLQVTGLH DETLLHNISL TLRKGEILGI AGLAGAGKTE LCKALFGAEP CQIAQGEYRG KPWRPHSPHQ SVEQGLALVP EERRKEGIFI DESVTMNLSI TATDSFSRWG VFSRSKAVSW AKQVVEQLAV RTTGPTQKLA RLSGGNQQKV AIGKWLRSEA QVLIFDEPTK GVDIKAKQDL FTLIDGLARQ GKGIIYASGE FSELVGLCDR ICVLWDGRIV AELNAAEIDE ETLLLYSTGG TPA
|
| |