| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1193 |
|---|
| Symbol | lnt |
|---|
| ID | 8132122 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1390419 |
|---|
| End bp | 1391948 |
|---|
| Gene Length | 1530 bp |
|---|
| Protein Length | 509 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864475 |
|---|
| Product | apolipoprotein N-acyltransferase |
|---|
| Protein accession | YP_003016777 |
|---|
| Protein GI | 253687587 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0815] Apolipoprotein N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR00546] apolipoprotein N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGTCG CTTCTTTTCT ACAACGCCAG CAGGTCAGAG CCCTGCTGGC GCTCTTATTT
GGTGCCTGTG GCACGCTGGC ATTTTCTCCC TTTGACTTCT GGCCCGCGGC GATTATCTCG
CTCATGGGCC TACAGGCGCT GACACTAAAC CGTACTAGCC GCCAGTCAGC CTGGATAGGC
TTTTGCTGGG GGTTCGGCCT ATTTGGCAGC GGCATTAACT GGGTTTACGT CAGTATCGCG
CAATTTGGTG GGATGCCGGG TCCTGTAAAC ATTGCACTGG TCATTCTGCT CGCGGCTTAT
TTATCGCTCT ATCCGCTACT GTTTGCTGCC CTGCTCTCAC GCCTCAGCCC GAAGACAACG
CTGTGGCGTC TGGCACTGGC CGCCCCCGTG CTTTGGCAAT TAACCGAATT TTTACGCGGC
TGGGTGCTGA CGGGCTTTCC GTGGCTACAA TTCGGCTACA GCCAGATTGA CGGCCCGCTA
AAAGGTATTG CGCCCATTCT GGGTATCGAC ACCATCACCT TCCTGTTGAT GAGTCTCAGC
GGGCTACTCG TTTATGCCAT CACTCAACGC AAAGTCGTTC CGGCGGCCAT TGCTATCGCT
GTTTTCGTTT TATCATGGCC GCTGCGCAAC GTGCAGTGGT ATACCCTGCA ACCTGAACGC
GCCGTCAATG TCGCACTGGT ACAGGGCGAT ATCCCGCAGG CCATGAAATG GGAACAAGAT
GAGCTATTGA ACACGCTGAA GATCTATCTG GATAACAGCC TGCCTTATAT GGACAAGGCA
CCTATCGTGA TCTGGCCGGA AACGGCGATT CCTGATATTG AAAGTCGTCA GGGCGCTTAT
CTGAAACAGG TTGACGATAT CTTGCGTAGC CACAATAGCA GCCTGATTAC AGGTATCGTC
GATATCCGGC GTGAGGGTAA CAAAACCGAT TTTTATAACT CGGTTATCGT GTTGGGCGAC
AAAGATCCGT ACCACTACCC TACAACGAAC CGTTACAACA AAAACCATCT GGTGCCTTTT
GGCGAGTTTG TCCCGTTGGA AACGCTGTTA CGCCCGCTGG CGCCGTTCTT CGATCTTCCT
ATGTCATCGT TCAGCCGGGG AGACTACGTC CAGCCTCAGC TCTCGGTTCA TGGCTTCAAG
CTTAATGCCG CCATTTGCTA TGAGATTATC TTAGGCCAAC AGTTGCGGGA TAACTTCCGG
CCAGACACCG ATATGTTGCT GACTATCTCG AACGATGCCT GGTTCGGTCA TTCAATTGGA
CCGTGGCAGC ATTTCCAGAT GGCACGCATG CGCGCGTTGG AATTAGGACG TCCCCTGGTT
CGGAGTACCA ATAACGGCGT CACCGCGGTG ATTACACCTG ATGGCAATGT CAGCGCCAGC
CTGCCGCAGT TTACGCGTGC GGTGCTGAGC ACACAGGTTG TGCCCGCTAC CGGAATCACA
CCTTATGCAC GTTTCGGTTC CTGGCCGCTC TGGATCATCA CGTTATTCGG CGGCATCGTT
ACCGTTCTCT TCGGTTTGCG TCGCCGATAA
|
|---|
| Protein sequence | MVVASFLQRQ QVRALLALLF GACGTLAFSP FDFWPAAIIS LMGLQALTLN RTSRQSAWIG
FCWGFGLFGS GINWVYVSIA QFGGMPGPVN IALVILLAAY LSLYPLLFAA LLSRLSPKTT
LWRLALAAPV LWQLTEFLRG WVLTGFPWLQ FGYSQIDGPL KGIAPILGID TITFLLMSLS
GLLVYAITQR KVVPAAIAIA VFVLSWPLRN VQWYTLQPER AVNVALVQGD IPQAMKWEQD
ELLNTLKIYL DNSLPYMDKA PIVIWPETAI PDIESRQGAY LKQVDDILRS HNSSLITGIV
DIRREGNKTD FYNSVIVLGD KDPYHYPTTN RYNKNHLVPF GEFVPLETLL RPLAPFFDLP
MSSFSRGDYV QPQLSVHGFK LNAAICYEII LGQQLRDNFR PDTDMLLTIS NDAWFGHSIG
PWQHFQMARM RALELGRPLV RSTNNGVTAV ITPDGNVSAS LPQFTRAVLS TQVVPATGIT
PYARFGSWPL WIITLFGGIV TVLFGLRRR
|
|---|
| |