Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_4556 |
Symbol | |
ID | 6207474 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 5854773 |
End bp | 5855858 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641694224 |
Product | 3-dehydroquinate synthase |
Protein accession | YP_001821427 |
Protein GI | 182416361 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0337] 3-dehydroquinate synthetase |
TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.491916 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.20017 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAACA CGTTGACCGT CGATCTCGGG CACCGCAGCT ACCCGATCGT CTTTGCGGCC GATGTGCGTA ATAACGTCCG CGATCAAGTC GCAGAGCTCA CCACCGCCGG CCGCAAAGTG GCGGTGTTCA CCGACGAGCA GGTGGCATCG GCCCAAGTCG GGGCGCTGGA AGCGATGTTT GGCTCCTCAC CGCGACTCGC GTTCGCGCCG GGCGAATCCG CGAAGTCACT CGCCTCATTT GGCCGCGCGA TGGATTTCCT GGCTGCGCAA AAAGTCGATC GCCGTGGTGT CGTCTTCGCT TTCGGCGGCG GGGTAATCGG CGATCTTGCC GGTTTCATCG CGGCGAGCTG GCTGCGCGGG ATCGATTTTT ATCAGGTGCC GACGACGTTG CTCGCGATGG TCGACAGCTC CGTCGGCGGC AAGACCGGGA TCAACATCCC GGCCGGCAAA AATCTCGTCG GGGCGTTTCA CCAGCCGCGC GGCGTGTTCA TCGGGACGGA TTTTCTGCGG ACGCTGCCGG CGCGGGAATT TGCCGCGGGT ATGGCCGAGG TCATCAAGTA TGGCCTCCTC GGCGACGCGG CGCTGCTGGA GCTGCTCGAG CGGGCGCCGT TGAGCTTTGT GAGTCCCGAA CTCGCCGGTG TGATTCGTCA ATGCTGTGCG TTGAAAGCGG CCTTCGTGCA GGCGGACGAG CGGGAACTCG CTCCCGAAGG CGGCCGCGCG TTGCTTAACC TGGGCCACAC GTTCGGTCAC GCCATCGAGC AGGTGACCGG CTATGGCGTC TACCTGCACG GCGAAGCCGT GGCGATCGGG ATGTGCGCGG CGGCGCGGTT GTCGGCAAAG CTGGGCCACC TCGGCGGGGC GGACGTGGCG CGCGTCGATG CGGTGGTTGC GGCGCACCGG CTGCCAGTGA AGTTACGGAC ACCGCTCGTG CTGATGGACC TGTTGGCCGC GATGGCGCGC GACAAAAAAG TGCGCGCGGG CATGCCGCGC TTCGTGGTGC TCCGAAAGCT CGGTGAAGCC GTCACGCAGG ACGACGTACC CGCGGAACTC GCGGCGGAGT GCTTCCGCGA AGTCGGCGCG AGCTGA
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Protein sequence | MPNTLTVDLG HRSYPIVFAA DVRNNVRDQV AELTTAGRKV AVFTDEQVAS AQVGALEAMF GSSPRLAFAP GESAKSLASF GRAMDFLAAQ KVDRRGVVFA FGGGVIGDLA GFIAASWLRG IDFYQVPTTL LAMVDSSVGG KTGINIPAGK NLVGAFHQPR GVFIGTDFLR TLPAREFAAG MAEVIKYGLL GDAALLELLE RAPLSFVSPE LAGVIRQCCA LKAAFVQADE RELAPEGGRA LLNLGHTFGH AIEQVTGYGV YLHGEAVAIG MCAAARLSAK LGHLGGADVA RVDAVVAAHR LPVKLRTPLV LMDLLAAMAR DKKVRAGMPR FVVLRKLGEA VTQDDVPAEL AAECFREVGA S
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