| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3084 |
|---|
| Symbol | |
|---|
| ID | 6205910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4017433 |
|---|
| End bp | 4018515 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641692749 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_001819964 |
|---|
| Protein GI | 182414898 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0672592 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACG AAATGAACGA ACTGCTCGAC CTCGTGGTCG ACCAAAATGC CTCGGATCTC
CACCTGCAGG TCGGCCAGCC GCCGACGCTC CGGATCAGTG GCAGCATGCT GCCGATCGAA
GGGCCGAATC TCACCCCGGC GGATACGGAG AAACTGATGC TCTCGGTCAC GCCGGACAAT
CACATCAGCA GCGTGAAGCT CAACGGCGGC GCGGATTTCG GGTTCGCGTT CGGTGAGAAG
GCCCGGTTCC GCGTGTCGGT GCTCAAGGCC AAGGGCAACT ACGGCATGGT GCTGCGCCAG
ATTCCCTACA AGATGTTTGG GCTGCGGGAC ATTGGACTGC CGGACAAGGT GCGCGAGTTG
CTCTACCGGC CGCGCGGGCT CATTCTCGTC ACCGGCCCGA CCGGGTCCGG CAAATCGACG
CCGCTCGCGT CGATGATCAA CTACATTAAC GAGAATCGCG ACGGGCACAT CATCACGATC
GAGGATCCGA TCGAGTATTA TCACAACCAC AAGCGGTGCG TGGTGACGCA GCGGGAGATC
GGTTCGGACG TGCCCAGTTT CGCGGAGGCG ATTCGCCGCG CGCTGCGCCA GGATCCGGAC
ATCATCCTCG TCGGCGAAAT GCGCGACCTC GAGACGATCG AGGCGGCGAT CAGCGCGGCG
GAAACGGGAC ACCTCGTGTT CGGCACGCTG CACACCAACA GCGCGGCCAA GACGATTGAC
CGCATCGTCG ACGCGTTTCC CGCGACGATG AAGGACATGA TCCGGACCCA GCTTGCTTCG
TCGGTGCAGG CGGTGATTTC CCAGGTGCTG TGCAAGAAAG TCGGCGGCGG CCGCATCGCC
GGCTACGAGA TCATGATCAC CACGACGTCG ATCGCGTCGC TGATCCGCGA GAACAAGACG
TTCCGCATTC CGTCCGACAT TCAGACCGGC GCGAACCTTG GGATGATCAC CATGGATACG
CACCTGATGA GCCTCTTCAA CCGGGAGCTC ATCAGTGCCG ACGAATGTGT GGAAAAAGCG
CAGGATCCCG TGGCGATGCG CGAGAAGCTC GTCGGCATGG GCGCGAAGCT GAAGACCCTG
TGA
|
|---|
| Protein sequence | MSYEMNELLD LVVDQNASDL HLQVGQPPTL RISGSMLPIE GPNLTPADTE KLMLSVTPDN
HISSVKLNGG ADFGFAFGEK ARFRVSVLKA KGNYGMVLRQ IPYKMFGLRD IGLPDKVREL
LYRPRGLILV TGPTGSGKST PLASMINYIN ENRDGHIITI EDPIEYYHNH KRCVVTQREI
GSDVPSFAEA IRRALRQDPD IILVGEMRDL ETIEAAISAA ETGHLVFGTL HTNSAAKTID
RIVDAFPATM KDMIRTQLAS SVQAVISQVL CKKVGGGRIA GYEIMITTTS IASLIRENKT
FRIPSDIQTG ANLGMITMDT HLMSLFNREL ISADECVEKA QDPVAMREKL VGMGAKLKTL
|
|---|
| |