Gene Oter_2954 details

Gene Information

• Locus tag: Oter_2954
• ID: 6204220
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Opitutus terrae PB90-1
• Kingdom: Bacteria
• Replicon accession: NC_010571
• Strand: -
• Start bp: 3794518
• End bp: 3797832
• Gene Length: 3315 bp
• Protein Length: 1104 aa
• Translation table: 11
• GC content: 67%
• IMG OID: 641692619
• Product: TPR repeat-containing protein
• Protein accession: YP_001819835
• Protein GI: 182414769
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 7
• Fosmid unclonability p-value: 0.189514
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGTCCAAGC GCCTGATCTG GATCAGCGGT GCCGTTTTGA TCCTCGTGAT TGCCGCGGCC 
CTCCTGTGGT TTTCGCCGGC TTCGCGCTCG TCCCACGCGA CGTCCGCCGA GTTCATGCAG 
CTAATGACGC GCGGCAACGG ACTGCTCGAG AACGGCGACG CCGCCGGGGC GATCGATGTT 
TACACCCGGG CCCTGCCGCT CTCGCCGCAA AGCACCGATG TCCGGCTCAA CCTCGCCAAC 
GCCTACCTGC TCGCGGAGCG ACCCATGGAC GCCGCCGCGG CCTGCCGCCA GGTGCTCGAC 
CTCGATCGCA ACAACGCTGC CGCCTACTAC CTGCTCGGCT GCGCCCTGCT CCGCCAGAAC 
CAGCCCGAGC CCGCTGCCGA GGCGTTTCAA CAGTCATGGA AGATTGAACC CGGCATTCCC 
GCGCTCGATT TTCAGATGGG CATGGCCCAG CGGGAACTCG GCCACTTGCC CGATGCGATC 
AGCCTGTTCG AGAGCGTCGT CCGCGCCGAG CCCGCCCATC CCTCGGCTCA TTATCAACTC 
AGCCAGCTCT ATCGTCGCGT TGGTCGCGCC GAAGACGCCA CGCGCGAGCT CCAGCAGCAC 
CAGCAAATCC TCGCGGGACT CTCGGCAGCC TCCATCACCG TCGCCGCGCT CGAGCGCTGC 
AAACACACGC AGCCGCTCGC GCCGTTCGTC CTCGCCCAAC CCGAACACGA CGGCATCGCC 
GTGCGTTTCG CCGACGACAC CGTCGCCGTC TTCGGTGAGC TGGCAGCGAG TCATCGCGGA 
CCACTGGCGA TCGTCGACTA CGGCCACGAT GGCCGGCCGA GCCTTTTCGT GCAGGACCAG 
ACCAGCGGGT TCGTTCTGCT CGACAACCGC GCCGGCAAGT TCGCTCCGCT GGGCCGACCG 
CTGCGCGTGC CGGCCGACGG CGGCTATCGC ACCGCGCTCA CCGGCGATCT CGACAACGAC 
GGACTCGACG ACGTGGTCGT GCTCGGCGAG CAGGATTCGC GCGTCTTCAA GTTTTACGCC 
CAGGGCCGCG TCCGTGACGC GACGCGCGCC GCCGGACTCG AAGGTCTCCG GGCCCGCGGC 
GGACTGCTCG CCGATCTCGA TTTCACCGGT AACCTCGACC TGCTCGTGGT GAAGCCGGAT 
GGTTCCGGGC TCGGCGTCCG GCGCAACCTC GGCAACCTGG CCTTCGACGC GAACTGGTCC 
GACTCCGGTC TGCCCGCAGA CGTTCCGGGC GCCACGCACG TGCTGACCGA AGACTGGGCC 
AACGAAGGAC GGCCTGGTGT GTTTGTTGCA CGCACCAGCA GCGCGCCGGT TTTTTTTGCC 
AAGCAGCGTG CGGCGGCGTT CACCCCGACC GAGCTGACCC GCACGTGGCC GACCGGCGCG 
GTGATCGCGA CAACGGATTT CGACAACGAC CTCCGCGCCG AAGCATGCCT CGCGACTGCC 
GACGCGATCG AGTTCGTCGG GCGCGAGCCG CACCAAAACC GCACGCTGCC GCTGAATGGG 
TTCGCGGTCG CGCAGCTGCT GCCCGTCGAC TACGACAACG ATGGCTGGAT CGACTTGATC 
GCGTGCGGCG CGCAGGGCCT TCGGATCTGG CGCAATGCCG GCAACGCCGG CTTCCGCGAC 
GTCACCGCCG CGCTGGGACT CACCGCCGCC GGGCCGATCG AGGAAATCGT CGCCGCGGAT 
TTCGACACCG ACGGCGACAC GGATTTCGTG ACCGGATCCG AAGCGGGGCT GCGCTTTTGG 
CGCAACGACG GCGGCAATCA AAACTTGCAG CTCAAGCTGC GGCTCGCCGG TCAGCGCTCG 
AACACGAGCG CGCTCGGCGT GCGCGTCGAA GTCACCGCCG GCAACTGGCG CACGCGTCGC 
ACGGTCCGGC AGAATCCATT GGAGCTTGGC GTCGGTCAGC ATCGGCAGCT CGATGCGCTG 
AAGATCCGCT GGTTCGATCT CACCACCTCG CAGGTCGACG TGCCGATCAC GCGCGAGGTT 
CACACCGTGG CCGAGCCGAC GCTGCCAAGC GGCTCATGCC CGTATCTCTA CGTCTGGCGC 
GGCGCGCGTT TCGAATTTGT CACCGATATC CTCGGCGCCG CCCCGCTCGG CTTGCCGATG 
AGCGAAAAAC GGTTCGTCGC GGCCGATCCC GAGGAGTTGC TCGCGCTCGG TAACGAGACG 
GCCTTCGTCC CGCGCGACGG CGCCTACGAA ATCCGAATCA CCGAGGAATT GCGCGAGGCG 
CTCTATCTCG ACGAGGCGCA CTTGATCGCC GTCGACCATC CGATCGGCAC CGTGGTGCAC 
CCAACCAGCA AGATGCTGCC CGGTCCGCCG TTCCCGCAGC ACGCATTGCG GGTGCTGCGT 
CCGCTCTCGG CTCCGCACCA GGCGACGCGC AGCGACAATC TCGACGTGAC TGCGGCGTTG 
GCACGAATCG ACCACGTGAT GGTTTCGCCG GTGCAGTTGC GCCGGCCGCA ACTCCGCGGA 
CTCGCGGAGC CGTACGCCGT CACCCTCGAC TTTGGAGTGT TGGCGGCCGA GCGGCCGCTG 
GTGTTGGCGC TCACCGGCTG GATTCGGTTC GGCGGCGGGA TGGCGAACAT CTCGGGCTCG 
ATTGACCCGA CGCTGCCGTT TCCGTTTCCC GGCCTCGAGG TGGAACTCGC CGACGGCGCG 
TGGCAGAAGG TGGACGTTGT CGTCGGTACG CCCGCGGGCA AAACGAAAAC GATTCTGGTC 
GATCTCGCCG GCAAGCTGCC CACCGGCGCG CGCCGACTGC GGCTCTCCAC TGCCTATGAA 
ATCTACTGGG ACGCTGCCTC GCTCTGCGAA GATGCCGGCA CCATCGACAC CCGCGAGCAG 
CACCTCAACG CAACGCGCAC CGACCTGCGC TGGCACGGCT ACGGTCGATT CGCGGATCTG 
CCGCCGTCGC TGCCGCTCAC GCCCCTCTAC GACGAGGTCT CGAGCGTGCC GCCGTGGGAT 
CGCACGCCCG GCGGCTGGTT CACGCGTTAC GGTGCCGTGG ACGAACTTGT CGCGCGGCGC 
GACGATCGGC TGGCACTCCT CGCCGCGGGC GACGAACTCG CGCTGTCGTT CGACGCCGCG 
CAGCTGCCGC CGCTCGCCCC CGGGATGACG CGCGACTTTT TCCTGCACGT GGTTGGTTGG 
GACAAGGACG CCGACTTCCA CGTCGAGCAA GGGTGGCGGC TCGAGCCGTT TCCTTACAGC 
GGCATGGACG ACCAAACCTA CGGGAAGGAA GCGCGGCCCG CGCACCTCGA TGACGCGTGG 
ATCAAGGACT ACAACACTCG CTGGGTGGAC GAGATCGTTC CCCATCCCGC CGGGAAACCG 
CAGCCCGTGC CGTGA 

 

Protein sequence

MSKRLIWISG AVLILVIAAA LLWFSPASRS SHATSAEFMQ LMTRGNGLLE NGDAAGAIDV 
YTRALPLSPQ STDVRLNLAN AYLLAERPMD AAAACRQVLD LDRNNAAAYY LLGCALLRQN 
QPEPAAEAFQ QSWKIEPGIP ALDFQMGMAQ RELGHLPDAI SLFESVVRAE PAHPSAHYQL 
SQLYRRVGRA EDATRELQQH QQILAGLSAA SITVAALERC KHTQPLAPFV LAQPEHDGIA 
VRFADDTVAV FGELAASHRG PLAIVDYGHD GRPSLFVQDQ TSGFVLLDNR AGKFAPLGRP 
LRVPADGGYR TALTGDLDND GLDDVVVLGE QDSRVFKFYA QGRVRDATRA AGLEGLRARG 
GLLADLDFTG NLDLLVVKPD GSGLGVRRNL GNLAFDANWS DSGLPADVPG ATHVLTEDWA 
NEGRPGVFVA RTSSAPVFFA KQRAAAFTPT ELTRTWPTGA VIATTDFDND LRAEACLATA 
DAIEFVGREP HQNRTLPLNG FAVAQLLPVD YDNDGWIDLI ACGAQGLRIW RNAGNAGFRD 
VTAALGLTAA GPIEEIVAAD FDTDGDTDFV TGSEAGLRFW RNDGGNQNLQ LKLRLAGQRS 
NTSALGVRVE VTAGNWRTRR TVRQNPLELG VGQHRQLDAL KIRWFDLTTS QVDVPITREV 
HTVAEPTLPS GSCPYLYVWR GARFEFVTDI LGAAPLGLPM SEKRFVAADP EELLALGNET 
AFVPRDGAYE IRITEELREA LYLDEAHLIA VDHPIGTVVH PTSKMLPGPP FPQHALRVLR 
PLSAPHQATR SDNLDVTAAL ARIDHVMVSP VQLRRPQLRG LAEPYAVTLD FGVLAAERPL 
VLALTGWIRF GGGMANISGS IDPTLPFPFP GLEVELADGA WQKVDVVVGT PAGKTKTILV 
DLAGKLPTGA RRLRLSTAYE IYWDAASLCE DAGTIDTREQ HLNATRTDLR WHGYGRFADL 
PPSLPLTPLY DEVSSVPPWD RTPGGWFTRY GAVDELVARR DDRLALLAAG DELALSFDAA 
QLPPLAPGMT RDFFLHVVGW DKDADFHVEQ GWRLEPFPYS GMDDQTYGKE ARPAHLDDAW 
IKDYNTRWVD EIVPHPAGKP QPVP