| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | OEOE_0183 |
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| Symbol | |
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| ID | 4415987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Oenococcus oeni PSU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008528 |
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| Strand | + |
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| Start bp | 171542 |
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| End bp | 175108 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 639668445 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_809840 |
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| Protein GI | 116490296 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCACT CATTAACAGA TTTTATTAGT CGTTTGCCTT TAATTGAGAA GATCGTTTCC
AACCAGGCAG ACCAAACTTC AACACAATTG ATTAGCGGAG TTAACGATAC CCCTAAGGCT
GCTTTAGCCG CTGGGGTTTT TGTGCGTTTA AAAGCAGAAA AAAATTCGAA AAAAATTCTT
CTTTTGACTG ATACCCAATT TCGGGCGGAT CAGTTAACAA GTGATTTGGA AGCCCTGCTT
GAAGACGAAA ATGTTTTTGA AATGCAGTCC GAGGAATCAT TGGCAACGGA AACGGCTGTC
GCATCGCGCG ATGCAGATTT AAGCCGTGTT TTAGCCTTGC GAGCTTTATT ATCCAAGGAA
AATTCAATTG TGGTTGTCCC GCTCTCTGGT CTATCACGTC GTTATCCAGA CCCTGAATTC
TTTCAGCAGG CCGTTTTGGA CTTTAAGATT GCAAATTCCT ACCCACAAGA GCAACTGGCA
AAAAAACTGA TTGAAATGGG TTATAACAAA CAGACCTTGG TGGCCAATCC CGGCGAATTT
TCGGTTCGGG GTGAAATTGT CGATATTTAT CCAATTAATT TCGATGAACC GATTCGACTT
GATTTCTTTG ATGATGAATT GGAATCGATG CGAACTTTTG ATGCTGATTC GCAAAAATCA
TTGAACAAGA TCAAACAGGC TTCTGTTTCG CCGGTTTCTG ATTTTCTTTT GCCGCGAGCC
GAGTTCAGTG ATGGCCTCAA GCAGCTTGAG CAGGCTTTTG TCGATTATCT AAATAAGTTG
AAGGGTGCCG AAAAGAAAAA ACTGACGGAG TTTTTTAATC CTTTACTGGA AGCAGCCAAG
CATTTTTCTT ATGGTCATGA ACTCCTGCCA TTTTCTGAGT TTTTTTTGAA ACATTCTATA
TTTGAATATC TGCAGTCTGA AGATTTGATT TTGATTGATG ATTTTGCTCG AATCAATGAT
CAAACAAATA TTCAAGAGAA AAAAAACGCC GAATGGATTA CCGATCGTTT GCGTGAATTT
AAGCTACTTC CTGATCTAAA AGTAAAAATC GACGGAATCA ATTTAATTAA AAAATCCCAA
CAAAAACTTT CAAAAAAAAT CCAGAAATTT GTCAATCCAA AAATATATCT CAGCAATTTA
ACACGTGGCT TGGCAGGAAT TACATTCACC AGCCGAACTC AATTGATTAC TCGACAGATG
CAACAATATT TTGGCCAAAT GCCGGCTTTG AAACTCGATT TGGAGTCCTA TCGAAAACGC
GATTTCACGG TTTTGCTCCA AGCTAGCAAT CGCGAACGTT TATTATCCTT ACAGAGAACT
TTGCATGATT TCGGAATGAA TTTTGCAATC ACTGACGATA TTCTTACCGG AACTGCCCAA
TTGCAGATTG GCAGTTTGTC TCACGGTTTT GAACTCCCGG AAGAGAAAAT TGTTGTCATG
ACCGAGACGG AATTATTCGC CAAAGTAAAA AAACGGGTGC CTCGTCATCA AACTTTTTCC
AATGCCGAAA AAATCACCAG TTACACAGAA TTAAAAACAG GTGATTATGT TGTTCACGTA
AATCACGGGA TTGGCCGTTA CGAGGGGCTA ACAACGCTTG AAGCTAATGG CGGCAAACAG
GATTACATTA CCATCGCCTA TGCTCAAAAA GCGAAAATTT TTGTTCCGGT GACACATTTG
AATTTGGTGC AAAAATACAT TGGTGCGGCT GACGGCAGGC CGAAGGTCAA TTCTCTAAAC
TCAACTGATT GGGCTAAAAC AAAACGTCGA GTGACCGCTA AAGTAGAGGA TATTGCTGAT
GAATTAATCG CTTTATATTC GAAGCGCGAG GGAGAAGTTG GTTACGCATT TTCAGTCGAT
GACCAAAGAC AGCAGGAGTT TGATGACGGC TTTGCTTACC CGGAAACAGT CGATCAGCTT
CGTTCGATTA AGGAAATAAA ATCAGATATG GAAAATAAGA AACCAATGGA TCGCCTTTTG
GTCGGCGATG TTGGTTTCGG TAAAACGGAA GTCGCTTTTC GAGCAGCCTT TAAGGCAATT
GAAGACCACA AACAAGTCGC GTTTTTAACA CCGACAACAA TTTTGTCCCA ACAGCACTAT
CAAACCGCAA TCGAAAGATT TTCGGATTTC CCGGAAATTA AGATTGCTAT GTTATCGCGT
TTTAATACTG CTGGACAGAA TAAAGAGGTT ATTAAGAAAT TAAAAGCCCA TCAACTTGAT
ATGGTTATTG GCACACACCG TTTATTGTCC AAGGACGTTG CTTTTGACGA TCTTGGCCTG
CTTATTATTG ACGAGGAACA GCGTTTTGGC GTTAAGCATA AAGAGAAAAT CAAACAGTTA
AGAGCTAATG TCGACGTTTT GACTTTAACC GCCACGCCGA TTCCGAGAAC CTTGAATATG
GCATTGGTTG GAGCCCGCGA TTTATCGGTT TTGGAAACGC CTCCTGCCAA TCGTTTTCCG
ATTCAGACTT ACGTTTTGGA GGAAAATTGG CCGGTTATTG CCGATGCAAT CGAAAAGGAA
TTGTCTCGTG GTGGCCAAAC TTTCTTTTTG CATAATCGGG TTCAGGATAT CGAGCGGACT
GTTGGTGAAA TTCAAAGAAT TGTTCCCGAC GCCAATGTGG GCTATATTCA CGGGCGGATG
AACGAAACTC AATTAGAAGA TGTCCTAATG GATTTTTTGA ATGGTATTTA CGATGTTTTG
GTTACAACGA CAATTATTGA AACGGGGGTC GATATTCCCA ATGCCAATAC TTTGATTGTT
GAAAATTCGG AACGTTTCGG CCTGTCGCAA CTTTACCAGT TACGTGGCCG AATTGGTCGT
TCTAATCGAT TAGCTTATGC ATACTTTACT TATCCAGGCG ATCGTCAACC AACTGAGGAT
GCTCAAAAAC GTCTGGAAGC GATTCGCGAT TTCACAGAAC TCGGTTCCGG TTTTAAATTA
GCGATGCGTG ATTTATCAAT TCGTGGTGCC GGTGACCTTC TAGGGAAACA ACAGCACGGT
TTCATTGATT CGGTTGGTTA CGAGCTTTAT CAACAGATGC TTCAAGAGGC GGTTTCTCAA
AAACAGGGAA AAGACAAAAA AGTTATGCAG ACAAATGCAG AAATTGTTCT TAATATCGAG
GCCCTTTTGC CGGACAGTTA TGTTAATGAT TCTTCTCAAA AAGTCGAGCT TTACCAGCGA
ATCAGAAAAT CGCGGACTGA CGAACAATTC AACGAGGTTC GTCAGGATTT GATTGACCGT
TTTGGTCCGA TTCCTGAGGT GGTAGATAAT CTTTTCGCTT TGGCTCACCT GAAAAACGCA
ACCGATGCAG CCAACGTCAT TAATCTTCAT GGTGATGATT CCCAAATCAG AATTATCTTT
AGTAGACGGG TCAGCCAAAT TCTGGCTGGG GAAACAATCT TCAAAACCTT AAAGGGACTT
CCATACAAGG TTCGTGTCAA AGCCGTTGAC GATCAAAAAC TGCAATTGAC AGTTATTTTA
AACGAGGATG AAAAACTCGT CTATATTGAT AAAATAACCA AATATCTTGA ATTGGTTTAT
AAGGAGCTAA AAAATGCGCT TGGATAA
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| Protein sequence | MMHSLTDFIS RLPLIEKIVS NQADQTSTQL ISGVNDTPKA ALAAGVFVRL KAEKNSKKIL
LLTDTQFRAD QLTSDLEALL EDENVFEMQS EESLATETAV ASRDADLSRV LALRALLSKE
NSIVVVPLSG LSRRYPDPEF FQQAVLDFKI ANSYPQEQLA KKLIEMGYNK QTLVANPGEF
SVRGEIVDIY PINFDEPIRL DFFDDELESM RTFDADSQKS LNKIKQASVS PVSDFLLPRA
EFSDGLKQLE QAFVDYLNKL KGAEKKKLTE FFNPLLEAAK HFSYGHELLP FSEFFLKHSI
FEYLQSEDLI LIDDFARIND QTNIQEKKNA EWITDRLREF KLLPDLKVKI DGINLIKKSQ
QKLSKKIQKF VNPKIYLSNL TRGLAGITFT SRTQLITRQM QQYFGQMPAL KLDLESYRKR
DFTVLLQASN RERLLSLQRT LHDFGMNFAI TDDILTGTAQ LQIGSLSHGF ELPEEKIVVM
TETELFAKVK KRVPRHQTFS NAEKITSYTE LKTGDYVVHV NHGIGRYEGL TTLEANGGKQ
DYITIAYAQK AKIFVPVTHL NLVQKYIGAA DGRPKVNSLN STDWAKTKRR VTAKVEDIAD
ELIALYSKRE GEVGYAFSVD DQRQQEFDDG FAYPETVDQL RSIKEIKSDM ENKKPMDRLL
VGDVGFGKTE VAFRAAFKAI EDHKQVAFLT PTTILSQQHY QTAIERFSDF PEIKIAMLSR
FNTAGQNKEV IKKLKAHQLD MVIGTHRLLS KDVAFDDLGL LIIDEEQRFG VKHKEKIKQL
RANVDVLTLT ATPIPRTLNM ALVGARDLSV LETPPANRFP IQTYVLEENW PVIADAIEKE
LSRGGQTFFL HNRVQDIERT VGEIQRIVPD ANVGYIHGRM NETQLEDVLM DFLNGIYDVL
VTTTIIETGV DIPNANTLIV ENSERFGLSQ LYQLRGRIGR SNRLAYAYFT YPGDRQPTED
AQKRLEAIRD FTELGSGFKL AMRDLSIRGA GDLLGKQQHG FIDSVGYELY QQMLQEAVSQ
KQGKDKKVMQ TNAEIVLNIE ALLPDSYVND SSQKVELYQR IRKSRTDEQF NEVRQDLIDR
FGPIPEVVDN LFALAHLKNA TDAANVINLH GDDSQIRIIF SRRVSQILAG ETIFKTLKGL
PYKVRVKAVD DQKLQLTVIL NEDEKLVYID KITKYLELVY KELKNALG
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